Locus 3565

Sequence ID 3R_DroMel_CAF1
Location 9,667,184 – 9,667,325
Length 141
Max. P 0.990207
window5728 window5729

overview

Window 8

Location 9,667,184 – 9,667,299
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.62
Mean single sequence MFE -34.94
Consensus MFE -35.18
Energy contribution -34.94
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -1.19
Structure conservation index 1.01
SVM decision value 0.75
SVM RNA-class probability 0.841692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9667184 115 - 27905053
-----AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAUUUGUAACUAAACUGCAAAUUAGCAGCCAAUUCCCAGGCCG
-----...((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))((((.(((((.((..((((........))))..)).)))))...)))). ( -35.10)
>DroSec_CAF1 58999 115 - 1
-----AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAUUUGUAACUAAACUGCAAAUUAGCAGCCAAUUCCCAGGCCG
-----...((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))((((.(((((.((..((((........))))..)).)))))...)))). ( -35.10)
>DroSim_CAF1 61952 115 - 1
-----AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAUUUGUAACUAAACUGCAAAUUAGCAGCCAAUUCCCAGGCCG
-----...((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))((((.(((((.((..((((........))))..)).)))))...)))). ( -35.10)
>DroEre_CAF1 59779 120 - 1
UGAUUCUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAGGCGGGUAAUUGCACGCUGGCGGCCAGAAUUUGUAACUAAACUGCAAAUUAGCAGCCAAUUCCCAGGCCG
........((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))((((.(((((.((..((((........))))..)).)))))...)))). ( -34.70)
>DroYak_CAF1 63694 119 - 1
-GAUUCUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAGGCGGGUAAUUGCACGCUGGCGGCCAGAAUUUGUAACUAAACUGCAAAUUAGCAGCCAAUUCCCAGGCCG
-.......((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))((((.(((((.((..((((........))))..)).)))))...)))). ( -34.70)
>consensus
_____AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAUUUGUAACUAAACUGCAAAUUAGCAGCCAAUUCCCAGGCCG
........((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))((((.(((((.((..((((........))))..)).)))))...)))). (-35.18 = -34.94 +  -0.24)

alignment

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secondary structure

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dotplot

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Window 9

Location 9,667,224 – 9,667,325
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.95
Mean single sequence MFE -35.82
Consensus MFE -32.06
Energy contribution -31.66
Covariance contribution -0.40
Combinations/Pair 1.06
Mean z-score -2.01
Structure conservation index 0.90
SVM decision value 2.20
SVM RNA-class probability 0.990207
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9667224 101 - 27905053
UCUGGAGUUAAGCGAACUGACCAUC-----C--------------AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAU
(((((((((.....)))).......-----.--------------.((((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))))))))).. ( -31.90)
>DroSec_CAF1 59039 101 - 1
UCUGGAGUUAAGUGAACUGACCAUC-----C--------------AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAU
(((((.((((.(....)))))....-----.--------------.((((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))))))))).. ( -32.70)
>DroSim_CAF1 61992 101 - 1
UCUGGAGUUAAGUGAACUGACCAUC-----C--------------AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAU
(((((.((((.(....)))))....-----.--------------.((((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))))))))).. ( -32.70)
>DroEre_CAF1 59819 120 - 1
UCUGGAGUUAAGUGAGCUGACCGUCGCGUCCAGCUCUCGUUGAUUCUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAGGCGGGUAAUUGCACGCUGGCGGCCAGAAU
((((((((((((.((((((..((...))..)))))).).)))))))((((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..)))).)))).. ( -43.70)
>DroYak_CAF1 63734 113 - 1
UCUGGAGUUAAGUGAACUGACCAUCGCGUCCAGC-------GAUUCUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAGGCGGGUAAUUGCACGCUGGCGGCCAGAAU
(((((.(((((((((((.((.(((((((.(((((-------(.....))))))...))))))).)).))))))))...............((((.((....)).)))))))..))))).. ( -38.10)
>consensus
UCUGGAGUUAAGUGAACUGACCAUC_____C______________AUCGUUGGCGUUGCGGUGUUUUGUUUAUUUUGAGGCUAUAAUUUAAGCGGGUAAUUGCACGCUGGCGGCCAGAAU
(((((((((.....))))............................((((..((((.(((((..((((((((..(((......)))..))))))))..)))))))))..))))))))).. (-32.06 = -31.66 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:22 2006