Locus 3561

Sequence ID 3R_DroMel_CAF1
Location 9,642,251 – 9,642,342
Length 91
Max. P 0.543642
window5718

overview

Window 8

Location 9,642,251 – 9,642,342
Length 91
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 85.74
Mean single sequence MFE -26.44
Consensus MFE -17.98
Energy contribution -19.90
Covariance contribution 1.92
Combinations/Pair 1.06
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.02
SVM RNA-class probability 0.543642
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9642251 91 + 27905053
GCCUGAAUCAAUGUUUAUAUUGUAUAUGAAUC-GCCAGGGCUUCGGAAUCGG----GGUAUC---AACGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC
(((((...(((((....)))))....((((((-(..(((((((((....)))----)))...---..((....)))))..))))))))))))....... ( -23.50)
>DroSec_CAF1 34987 91 + 1
GUCUGAAUCAAUGUUUAU-----AUAUGAAUCCGGCAGGGCUUCGGAAUCGGAAUCGGAAUC---AUCGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC
(((.((.(((.(((....-----)))))).)).))).((((((..(((((((((.((((.((---...)).))))..)))))))))..))))))..... ( -25.80)
>DroSim_CAF1 37474 91 + 1
GCCUGAAUCAAUGUUUAU-----AUAUGAAUCCGGCAGGGCUUCGGAAUCGGAAUCGGAAUC---AUCGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC
(((.((.(((.(((....-----)))))).)).))).((((((..(((((((((.((((.((---...)).))))..)))))))))..))))))..... ( -28.50)
>DroEre_CAF1 35746 83 + 1
GUCUGAAUCAAUGUUUAU-----AUAUGAAUC-GGCAGGGCUUCGGAUUCGGAUU------CGGAAUCGAAUUCGCUUUUCGAUUCGCAGGCCUC----
(.((((.(((.(((....-----)))))).))-))).((((((((((((((((((------((....))))))))......)))))).)))))).---- ( -25.20)
>DroYak_CAF1 36476 93 + 1
GUCUGAAUCAAUGUUUAU-----AUAUGAAUC-GGCAGGGCUUCGGAUUCGGAAUCGGAAUCGGAAUCGAAUUCGCUUUCCGAUUCACAGGCCUCACUC
(((((.....((((....-----))))(((((-((.(((((...((((((((..(((....)))..)))))))))))))))))))).)))))....... ( -29.20)
>consensus
GUCUGAAUCAAUGUUUAU_____AUAUGAAUC_GGCAGGGCUUCGGAAUCGGAAUCGGAAUC___AUCGAAUUCGCUUUUCGAUUCACAGGCCUCGCUC
(((.((.(((.(((.........)))))).)).))).((((((..((((((((..((((.((......)).))))...))))))))..))))))..... (-17.98 = -19.90 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:12 2006