Locus 356

Sequence ID 3R_DroMel_CAF1
Location 1,385,672 – 1,385,769
Length 97
Max. P 0.845911
window586

overview

Window 6

Location 1,385,672 – 1,385,769
Length 97
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.91
Mean single sequence MFE -26.85
Consensus MFE -16.46
Energy contribution -16.44
Covariance contribution -0.02
Combinations/Pair 1.42
Mean z-score -1.65
Structure conservation index 0.61
SVM decision value 0.77
SVM RNA-class probability 0.845911
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1385672 97 - 27905053
UCUAGCCGUUCUUGCGCAU----AAGGUGGGAGUUGGGUCGUCCAGUUCUGGGCCUAACUUCGUCGAUCU--UUUACUUUU-----CCGCGCAUAGAUAAAUAAGAUC
(((......((((((((..----((((((((((((((((...(((....)))))))))))))(.....).--..)))))).-----..))))).)))......))).. ( -27.80)
>DroSec_CAF1 1448 97 - 1
UCUAGCCGUGCUUGCGCAU----AAGGUGAAAGUUAGGUCGUCCAGUUCUGGGCCUAACUUCGUCGAUUU--UUUACUUUU-----CCGCGCAUAGAUAAAUAAGAUC
(((.......(((((((..----((((((((((((((((...(((....)))))))))))..........--)))))))).-----..))))).)).......))).. ( -25.14)
>DroSim_CAF1 1463 99 - 1
UCUAGCCGUGCUUGCGCAU----AAGGUGAAAGUUAGGUCGUCCAGUUCUGGACCUAACUUCGUCGAUUUUUUUUACUUUU-----CCGCGCAUAGAUAAAUAAGAUC
(((.......(((((((..----(((((((((((((((...((((....)))))))))))............)))))))).-----..))))).)).......))).. ( -24.84)
>DroEre_CAF1 1493 96 - 1
UCCAACCGUUUUUGCGCAU----AAGCUAGGAGUUAGGUCGUCCAGUUCUGGGCCUAACUUUGUUAAUUU--GUUACUUUU-----CCGCGCAUAUAUAAAUAA-AUC
............(((((..----......((((((((((...(((....)))))))))))))((......--...))....-----..)))))...........-... ( -20.80)
>DroYak_CAF1 1573 96 - 1
UCUAGCCGUUCUUGCGCAU----AACGUAGGAGUUAGGUCGUCCAGUUCUGGGUCUAACUUCGUUAAUUU--UUUACAUUU-----CCGCGCAUAGAUAAAUAA-AUC
.......(((..(((((..----......(((((((((...((((....)))))))))))))((......--...))....-----..)))))..)))......-... ( -22.40)
>DroAna_CAF1 1481 99 - 1
UUGAAUUAUGGUUGCGCGUUGAUUAAGUGGGGGGCAG-----AGAGCCCUGGCCCUCCAUUUUAUUAUUU--UUUGCUCUGUUGGGCAGCGCACACAUAAAGA--UUC
.....(((((..(((((..((((.(((((((((((((-----......)).))))))))))).))))...--..(((((....))))))))))..)))))...--... ( -40.10)
>consensus
UCUAGCCGUGCUUGCGCAU____AAGGUGGGAGUUAGGUCGUCCAGUUCUGGGCCUAACUUCGUCGAUUU__UUUACUUUU_____CCGCGCAUAGAUAAAUAA_AUC
............(((((......((((((((((((((((...(((....))))))))))))............)))))))........)))))............... (-16.46 = -16.44 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:07 2006