| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,639,599 – 9,639,711 |
| Length | 112 |
| Max. P | 0.892501 |
| Location | 9,639,599 – 9,639,711 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -24.31 |
| Energy contribution | -24.53 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9639599 112 + 27905053 AUCCCACUGGAACAUACCGGCGACCACGCGACACGCAGGACUCCCGCCAAAAGAGGCGACAGGACUGCCUGGAUCCAACCGGGCAGUACUAGACGCUGAUAUCCCAACAACA .......(((...(((.(((((.((..(((...)))........((((......))))...))(((((((((......)))))))))......))))).))).)))...... ( -37.10) >DroPse_CAF1 32595 112 + 1 AUCCCACAGGAACCUACCGUCGCCCACGCGACACAAAAGACACACGCCAGAAACGGCGUCAGGACUGCCUAGAUCCCACCGGGCAGUACUGAGGAUCAACAUCCUAACAUCA .......((((.......(((((....)))))......((..(.((((......))))((((.((((((..(......)..)))))).)))))..))....))))....... ( -36.30) >DroEre_CAF1 33242 112 + 1 AUCCCACUGGAACCUAUCGGCGACCCCGCGACGCGCAGGACUCCCGCCAAAAGAGGCGACAGGACUGCCUGGAUCCAACCGGGCAGUACUAGGCACUGAUCCCCCGACUUUC ......((((..(((.((((.((..(((((...))).))..))))(((......))))).)))(((((((((......))))))))).)))).................... ( -37.80) >DroYak_CAF1 33799 112 + 1 AUCCCACUGGAACCUACCGGCGACCCCGCGACGCGCAGGACUCCCGCCAAAAGAGGCGACAGGACUGCCUGGAUCCAACCGGGCAGUACUAGACACUGACACCCCGACUUCA ......((((..(((...((.((..(((((...))).))..))))(((......)))...)))(((((((((......))))))))).)))).................... ( -35.40) >DroAna_CAF1 31941 109 + 1 AUCCCACAGGAACGUACAGGCGACCCCGCGACUCGCAGGACACACGCCAGAAGCGGCGCCAGGAUUGCCUGGAUCCAACCGGGCAGUACUGAG--CCAAUUCAGUGACAAC- ....(((...........((((..((.(((...))).)).....)))).(((..(((..(((.(((((((((......))))))))).))).)--))..))).))).....- ( -39.90) >DroPer_CAF1 32227 112 + 1 AUCCCACAGGAACCUACCGUCGCCCACGCGACACAAAAGACACACGCCAGAAACGGCGUCAGGACUGCCUAGAUCCCACCGGGCAGUACUGAGGAUCAACAUCCUAACAUCA .......((((.......(((((....)))))......((..(.((((......))))((((.((((((..(......)..)))))).)))))..))....))))....... ( -36.30) >consensus AUCCCACAGGAACCUACCGGCGACCACGCGACACGCAGGACACACGCCAAAAGAGGCGACAGGACUGCCUGGAUCCAACCGGGCAGUACUAAGCACCAACACCCCAACAUCA .(((....)))........(((....)))........((.....((((......))))..((.(((((((((......))))))))).)).............))....... (-24.31 = -24.53 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:10 2006