| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,631,672 – 9,631,767 |
| Length | 95 |
| Max. P | 0.547089 |
| Location | 9,631,672 – 9,631,767 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.94 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -19.70 |
| Energy contribution | -18.95 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9631672 95 - 27905053 CGUUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCCG----------GCG-----AGCCAACGAAACGAAAGUGAAAGCCUGUGCAUUUGGCUCAAACGAUUUGGGCCACUG (((((....(((....(((.(((....))).))))----------))(-----((((((....((....))....((....))..))))))))))))............. ( -26.40) >DroPse_CAF1 25297 104 - 1 CGUUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCCAGUUGCCGGCUGCC-----AGCCGGCCCAACGAAAGUGAAAGC-UGCGCAUUAGACUCAAGCGAUUUGGGGCAACU ......((..((((((.((((.....((((((((((((((((((....-----.))))))...((....))...)))-)).)))))))....)))).)))))).)).... ( -43.10) >DroSec_CAF1 24504 95 - 1 CGUUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCCG----------GCG-----AGCCAACAAAACGAAAGUGAAAGCCUGUGCAUUUGGCUCAAACGAUUUGGGCCACUG (((((....(((....(((.(((....))).))))----------))(-----((((((....((....))....((....))..))))))))))))............. ( -26.40) >DroYak_CAF1 25313 95 - 1 CGCUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCCA----------ACG-----AGCAAACGAAGCGAAAGUGAAAGCCUGUGCAUUUGGCUCAAACGAUUUGGGCCACUG .((.((((.((....((((.(((....))).))))----------...-----.)).......((....))....).))).))...((((((((.....))))))))... ( -25.00) >DroAna_CAF1 24462 99 - 1 CGUUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCUG----------CCGCUGCCGGCAAGCG-AGCGAAAGUGAAAGCCUGCGCAUUAGGCUCAAACGAUUUGGGCCAGUG ......((.((.....((((((........(((((----------(((....)))).))))-.((....)).)))))).))))....(((((((.....))))))).... ( -33.10) >DroPer_CAF1 25039 104 - 1 CGUUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCCAGUUGCCGGCUGCC-----AGCCGGCCCAACGAAAGUGAAAGC-UGCGCAUUAGACUCAAGCGAUUUGGGGCAACU ......((..((((((.((((.....((((((((((((((((((....-----.))))))...((....))...)))-)).)))))))....)))).)))))).)).... ( -43.10) >consensus CGUUUAGCAGCCAAAUGGCUUUAUUAUUGAUGCCA__________GCG_____AGCCAACGAAACGAAAGUGAAAGCCUGCGCAUUAGGCUCAAACGAUUUGGGCCACUG ......(((((....((((.(((....))).))))............................((....))....)).)))......((((((((...)))))))).... (-19.70 = -18.95 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:08 2006