Locus 3553

Sequence ID 3R_DroMel_CAF1
Location 9,623,659 – 9,623,749
Length 90
Max. P 0.973087
window5708

overview

Window 8

Location 9,623,659 – 9,623,749
Length 90
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.87
Mean single sequence MFE -32.18
Consensus MFE -30.04
Energy contribution -29.82
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.42
Structure conservation index 0.93
SVM decision value 1.70
SVM RNA-class probability 0.973087
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9623659 90 - 27905053
----AUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGACGU-GUGGAGUG-------CG--------
----.((((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))))(((-.......)-------))-------- ( -31.10)
>DroVir_CAF1 19307 81 - 1
----CUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGGCAU-G------------------------
----.((((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))))...-.------------------------ ( -29.90)
>DroGri_CAF1 21304 90 - 1
----AUUGCCGAAACCCGGGAUUGAACCGGGGACAUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCACUCUUAUUGCUUG-------A---------
----..(((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))).............-------.--------- ( -30.20)
>DroSec_CAF1 16672 94 - 1
UCUUGUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGACGU-GUUAGACG-------UG--------
....(((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))))..-........-------..-------- ( -34.50)
>DroWil_CAF1 15907 105 - 1
----CUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGCUGU-GUCGUAGGCAGUCGAAGGCCCUGGG
----....(((.....))).......((((((.((.((((((.....)))))).((((........))))...(((((((((..-......))).)))))))))))))). ( -35.80)
>DroAna_CAF1 16925 84 - 1
----AAUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCA-------UAUGAG-------UG--------
----.((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))-------).....-------..-------- ( -31.60)
>consensus
____AUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUCUCCCAACUGAGCUAUUUCGGCGACGU_GUUGUAUG_______AG________
......(((((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))).............................. (-30.04 = -29.82 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:02 2006