| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,619,045 – 9,619,151 |
| Length | 106 |
| Max. P | 0.566079 |
| Location | 9,619,045 – 9,619,151 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.32 |
| Mean single sequence MFE | -29.53 |
| Consensus MFE | -24.83 |
| Energy contribution | -24.67 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.566079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9619045 106 - 27905053 ACACAUAUAUUGUAGUUGGAGGGCAGGUCAGUCGGAGCAAUGUUUAAUUUGCUUUGCAUUUUGUUUGGCCAAACUCCAGCAGAGUCGAUGGCUCAGUCCCAAAAAC ..(((.....))).(((((((....((((((.((((((((........))))))))........))))))...))))))).((((.....))))............ ( -30.40) >DroSim_CAF1 12349 96 - 1 AU---------AUAGUUGGAGGGCAGGUCAGUCGGAGCAAUGUUUAAUUUGCUUUGCAUUUUGUUUGGCCAAACUCCAGCAGAGUCGAUGGCUCAGUCCCAA-AAC ..---------...(((((((....((((((.((((((((........))))))))........))))))...))))))).((((.....))))........-... ( -30.10) >DroEre_CAF1 12524 95 - 1 -U---------ACAGUCGGAGGGCAGGUCAGUCGGGGCAAUGCUUAAUUUGCUUUGCAUUUUGUUUGGCCAAACUCCAGCAGAGUCGAUGGCUCAGUCCCAA-GAC -.---------...(((...((((.((((((.(((.((((.((.......)).))))...))).))))))...........((((.....)))).))))...-))) ( -28.70) >DroYak_CAF1 12588 95 - 1 -U---------AUAGUUGGAGGGCAGGUCAGUCGGAGCAAUGUUUAAUUUGCUUUGCAUUUUGUUUGGCCAAACUCCAGCAGAGUCGAUGGUUCAGUCCCAA-AAC -.---------...(((((((....((((((.((((((((........))))))))........))))))...)))))))........(((.......))).-... ( -26.20) >DroAna_CAF1 11782 96 - 1 -A---------AGAGUUGGAGGGCAGGUCAGGCGGCGUAACGUUUAAUUUGCUUUGCAUUCUGUUUGGCCAAACUCCAACAGCGUCGAUCGUUUUGGCCCGAAUGU -.---------...(((((((....((((((((((.((((.((.......)).))))...))))))))))...))))))).(.(((((.....))))).)...... ( -31.40) >DroPer_CAF1 12908 88 - 1 -C---------CGAGUUGGAGGGCAGGUCAGGCCGAGCACAGUUUAAUUUGCUUUGCAUUUUGUUUGGCCAAACUCCAACAGCGCCGCUGAUG---ACGCG----- -.---------...(((((((((....)).(((((((((.(((.(((......))).))).)))))))))...))))))).(((.((....))---.))).----- ( -30.40) >consensus _U_________AUAGUUGGAGGGCAGGUCAGUCGGAGCAAUGUUUAAUUUGCUUUGCAUUUUGUUUGGCCAAACUCCAGCAGAGUCGAUGGCUCAGUCCCAA_AAC ..............(((((((....(((((..((((((((.((.......)).))))..))))..)))))...))))))).((((.....))))............ (-24.83 = -24.67 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:01 2006