Locus 3551

Sequence ID 3R_DroMel_CAF1
Location 9,614,171 – 9,614,272
Length 101
Max. P 0.587114
window5706

overview

Window 6

Location 9,614,171 – 9,614,272
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -23.60
Consensus MFE -18.20
Energy contribution -19.40
Covariance contribution 1.20
Combinations/Pair 1.04
Mean z-score -1.18
Structure conservation index 0.77
SVM decision value 0.11
SVM RNA-class probability 0.587114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9614171 101 - 27905053
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU------AAACUCAUUCAACACUUUGGC
.((..(((....((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).......------..............)))..)) ( -24.60)
>DroSec_CAF1 7380 86 - 1
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU------AUUCUA---------------
(((....)))..((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).......------......--------------- ( -23.30)
>DroSim_CAF1 7411 101 - 1
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU------ACACUCUUUCAACCCUUUGGA
(((....)))..((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).......------............((....)). ( -23.40)
>DroEre_CAF1 7505 107 - 1
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUACUUUCUCUCUGCACACUUUCAACCCUUUGUG
(((....)))((((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).............)).(((............))) ( -25.90)
>DroYak_CAF1 7530 101 - 1
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUGUGGGUUAUGAGCCGCCUUCCCUGCACACAGAGAAAUGCUUU------ACACACUUUCAACCCUUUGUG
.((.(((((.((.....((((((.(....((((....)))).))))))))).)))))....)).(((((((.........------..............))))))) ( -21.70)
>DroAna_CAF1 6827 86 - 1
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGGCGC---CUCAGUACACAGAAAA-CAUUUU------AAGAUUAUUA-----------
.((((((((.((.....((((((.(((((.......)))))..)))))).))))---))))))..........-......------..........----------- ( -22.70)
>consensus
GGCUGAGGCCGCGUUGAUCAUGAACAUGACACAAUAUUAUGGAUUAUGAGCCGACUUCUCUGCACACAGAGAAAUAUUCU______ACACUCUUUCAACCCUUUG__
(((....)))..((((.((((((.(((((.......)))))..))))))..))))(((((((....))))))).................................. (-18.20 = -19.40 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:00 2006