Locus 355

Sequence ID 3R_DroMel_CAF1
Location 1,383,274 – 1,383,380
Length 106
Max. P 0.500000
window585

overview

Window 5

Location 1,383,274 – 1,383,380
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 84.81
Mean single sequence MFE -22.42
Consensus MFE -13.24
Energy contribution -14.04
Covariance contribution 0.80
Combinations/Pair 1.07
Mean z-score -2.07
Structure conservation index 0.59
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1383274 106 + 27905053
GGAUAAAAAAGUCCUUUGGAUUUAAGUAUGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUGAAAUAAUAAGGUAUAUACAUACUUAUGUUCGAAAAGGGCUUUAGU
.......((((((((((((((.((((((((((((....))))......((((((((((((...))))))))))))...)))))))).))))))..))))))))... ( -30.80)
>DroSec_CAF1 9218 106 + 1
GGAUAAAAAAGUCCUUAGGAUUUAAGUACGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUAAGGUAUAUACGUACUUAUGUUCGAAAAGAGCUUUAGU
.......((((..(((.((((.((((((((((((....))))......((((((((((((...))))))))))))...)))))))).))))...)))..))))... ( -26.60)
>DroSim_CAF1 9468 106 + 1
GGAUAAAAAAGUCCUUAGGAUUUAAGUAAGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUAAGGUAUAUACAUACUUAUGUUCGAAAAGAGCUUUAGU
.......((((..(((.((((.((((((((((((....))))))....((((((((((((...)))))))))))).....)))))).))))...)))..))))... ( -21.80)
>DroEre_CAF1 8934 98 + 1
U---GAACAAGUCCUUAGGAUUUAAGUACGUCUGCUGCUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUUAGGUAUUUACAU----AUGAUCGA-AAGAGCUUUAGU
.---.((((((..(((((((((..((((....))))...)))))))))....))))))..((((((......))))))...----....((..-..))........ ( -14.50)
>DroYak_CAF1 7304 99 + 1
A---GUACAAGUUCUUAGGACUUUAGUACGUCUGCUGGUAGUUUAAAGAUAUUUUCUAAUUUAAUAAUAAGGUAUAUACAU----AUAUUUGAAAAGAGCUUGAGU
.---...(((((((((.(((((((((((....)))))).)))))..(((.....)))............(((((((....)----))))))...)))))))))... ( -18.40)
>consensus
GGAUAAAAAAGUCCUUAGGAUUUAAGUACGGCUGCUAGUAGUUUUAAGAUAUUUUGUUAUUAAAUAAUAAGGUAUAUACAUACUUAUGUUCGAAAAGAGCUUUAGU
.......(((((.(((((((((..((((....))))...)))))))))((((((((((((...)))))))))))).......................)))))... (-13.24 = -14.04 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:06 2006