Locus 3546

Sequence ID 3R_DroMel_CAF1
Location 9,595,405 – 9,595,519
Length 114
Max. P 0.644975
window5699

overview

Window 9

Location 9,595,405 – 9,595,519
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 81.35
Mean single sequence MFE -39.08
Consensus MFE -24.26
Energy contribution -25.80
Covariance contribution 1.54
Combinations/Pair 1.34
Mean z-score -1.86
Structure conservation index 0.62
SVM decision value 0.23
SVM RNA-class probability 0.644975
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9595405 114 - 27905053
CUUCGGAGUGCUACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUCAAUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCGCUUGGUAGUGCUAGUAGUUGG
...(.((.(((((((((((((.((..((((((((((.(((((.(((.(..((.((....))))..).))).))))))))))).))))..)).).))))))))...)))).)).) ( -42.80)
>DroSec_CAF1 1586 114 - 1
CUUUGGAGUGCCACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUUACUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCUCUUGGUAGUGCUCGUAGUUGG
.....(((...(((((((((..((..((((((((((.(((((.(((.(..((((....)).))..).))).))))))))))).))))..))...))))))))))))........ ( -43.00)
>DroSim_CAF1 1584 114 - 1
CUUUGGAGUGCCACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUUACUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCUCUUGGUAGUGCUCGUAGUUGG
.....(((...(((((((((..((..((((((((((.(((((.(((.(..((((....)).))..).))).))))))))))).))))..))...))))))))))))........ ( -43.00)
>DroEre_CAF1 2862 114 - 1
CUUUUGAGUGCUACUGCCAGCAGUUGGAACAGGAACUGGGGCGGAUGUUGGCUUAACAGGACUUGAAGUAGGUUUCGGUUUGGGCUUUGGUCUUUUGGUAGUGCUCAUAGUUGG
....((((..((((((((((.((((.((((.((((((....((..(.(((......))).)..)).....)))))).)))).))))))))).....)))))..))))....... ( -37.00)
>DroYak_CAF1 2855 114 - 1
CUUCUGAGUGCUACUGCCAACAGUUGGCACAGGACCUGGAGCGGAUGUUGGGCUUACAAGACUUGAAGUUGGUUUCGGUUUUGGUUUUGGUCUUUUAGUGGUGCUCGUAGUUGG
.....(((..(((((((((.....)))).(((((((.(((((.(((.(..((((....)).))..).))).)))))))))))).............)))))..)))........ ( -39.20)
>DroAna_CAF1 2936 108 - 1
UUUGGGGGUGCUGCUACCCAAAGAUGGCACAGGUGCUAAAGUG------GUGCUAACUGAACUAGAUGUUGGCUGGGGUUUUGGCUUAGGUCUGCGAGUGGUAGUGGUUGUUGG
.........((..((((((..((.((((((....((....)).------)))))).))....(((((.(.(((..(....)..))).).)))))...).)))))..))...... ( -29.50)
>consensus
CUUUGGAGUGCUACUGCCAACAGUUGGAACAGGACCUGGAGCGGAUGUUGGGCUUACUGGACUUGAAGUUGGCUUCGGUUUUGGUUUUGGCCUCUUGGUAGUGCUCGUAGUUGG
.....((.((((((((((((.(((..((((..((.(((((((.(((.(..((((....)).))..).))).))))))).))..))))..).)).)))))))))...))).)).. (-24.26 = -25.80 +   1.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:53 2006