| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,593,113 – 9,593,224 |
| Length | 111 |
| Max. P | 0.600114 |
| Location | 9,593,113 – 9,593,224 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.77 |
| Mean single sequence MFE | -39.08 |
| Consensus MFE | -15.89 |
| Energy contribution | -20.22 |
| Covariance contribution | 4.33 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9593113 111 - 27905053 AACACUCUUUUUUUUUUGCAGUCCGGUUCUUGGAUUGCGCCUUUGUUCCUGCGUAGAGUGCGUGAGAGGUGCGAUUCUC--------CGAAGAAUCGCAACU-UUGCGGGAAUGGUCGCG .................((((((((.....))))))))((..(..((((((((..((((.(....)...(((((((((.--------...))))))))))))-)))))))))..)..)). ( -42.90) >DroPse_CAF1 1128 94 - 1 ----CUCGAG----GC--GAGUCCGGUUC------------UUUGUUCCUGCGUAAGGUGCGUGAGAGGCGCGACUCUCGUCU----CGGACGAUCUCGAUGACAACGAGAGUGGGUUAG ----.(((((----(.--(((((((.(((------------(((((.(((.....))).))).))))).)).)))))(((((.----..)))))))))))((((.((....))..)))). ( -35.90) >DroEre_CAF1 564 115 - 1 AACACUCUUC----UUUGCAGUCCGGUUCUUGGAUUGCGCCUUUGUUCCUGCGUGGAGUGCGUGAGAGGUGCGAUUCUCCUCUGUUGCGAAGAAUCGCAACU-UUACGGGAAUGGUCGAG ....(((...----...((((((((.....))))))))(((...(((((..((((((((.(....)...(((((((((.(.(....).).))))))))))))-))))))))))))).))) ( -40.90) >DroYak_CAF1 507 107 - 1 AACACUCUUU----UUUGCAGUCCGGUUCUUGGAUUGCGCCUUUGUUCCUGCGUAGAGUGCGUGAGAGGUGCGAUUCUC--------CGAAGAAUCGCAACU-UUACGGGAAUGGUCGAG ....(((...----...((((((((.....))))))))(((...(((((..((((((((.(....)...(((((((((.--------...))))))))))))-))))))))))))).))) ( -40.60) >DroPer_CAF1 1114 96 - 1 ----CUCGAG----GCUGGCGUCCGGUUC------------UUUGUUCCUGCGUAAGGUGCGUGAGAGGCGCGACUCUCGUCU----CGGACGAUCUCGAUGACAACGAGAGUGGGUUAG ----.(((((----(....(((((((..(------------...((.(((.....))).))..(((((......))))))..)----)))))).))))))((((.((....))..)))). ( -35.10) >consensus AACACUCUUG____UUUGCAGUCCGGUUCUUGGAUUGCGCCUUUGUUCCUGCGUAGAGUGCGUGAGAGGUGCGAUUCUC_UCU____CGAAGAAUCGCAACU_UUACGGGAAUGGUCGAG .................((((((((.....))))))))....(..((((((((.....)))((((....(((((((((............)))))))))....)))))))))..)..... (-15.89 = -20.22 + 4.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:52 2006