Locus 3543

Sequence ID 3R_DroMel_CAF1
Location 9,588,678 – 9,588,777
Length 99
Max. P 0.534515
window5695

overview

Window 5

Location 9,588,678 – 9,588,777
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 93.56
Mean single sequence MFE -15.04
Consensus MFE -11.87
Energy contribution -12.20
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.79
SVM decision value 0.00
SVM RNA-class probability 0.534515
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9588678 99 - 27905053
ACCCCACUCCAUCUGACUUUCGAUUUUUCGUAGUCCUUUCGCAACAGAUACAUACGAGUAUAUGUAUAUAACGCCCCUCUUCCCAAAAAACUCAGUCAC
..............((((..(((....))).)))).....((.....(((((((......))))))).....))......................... ( -12.00)
>DroSec_CAF1 64931 97 - 1
ACCCCG--CCAUCUGACUUUCGAUCUUUCGUAGUCCUUUCGCAACAUAUACAUACGAGUCUAUGUAUAUAACGACCCCCUCCCCAAAAAACUCAGUCAC
.....(--(.....((((..(((....))).)))).....))...(((((((((......)))))))))...(((...................))).. ( -15.11)
>DroSim_CAF1 75129 97 - 1
ACCCCG--CCAUCUGACUUUCGAUCUUUCGUAGUCCUUUCGCAACAUAUACAUACGAGUGUAUGUAUAUAACGACCCCCUCCCCAAAAAACUCAGUCAC
.....(--(.....((((..(((....))).)))).....))...((((((((((....))))))))))...(((...................))).. ( -18.01)
>consensus
ACCCCG__CCAUCUGACUUUCGAUCUUUCGUAGUCCUUUCGCAACAUAUACAUACGAGUAUAUGUAUAUAACGACCCCCUCCCCAAAAAACUCAGUCAC
..............((((..(((....))).))))..........(((((((((......))))))))).............................. (-11.87 = -12.20 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:49 2006