| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,579,217 – 9,579,325 |
| Length | 108 |
| Max. P | 0.989042 |
| Location | 9,579,217 – 9,579,325 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -35.53 |
| Consensus MFE | -19.07 |
| Energy contribution | -19.05 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.54 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9579217 108 - 27905053 GCCAAGGCCAGGGCACUUUUGGCCGGCUUAAGUAUAUCGGGCAUGUCCUUGCCCUGUCGCUUCUUGGUCUUCUUCUUCAGGGUUUCAGUGCCC---------GAUUUCUUGCACUUC (((..(((((((.....)))))))))).((((...(((((((((......((((((.....................))))))....))))))---------)))..))))...... ( -39.10) >DroSec_CAF1 55458 108 - 1 GCCAAGGCCAGGGCACUCUUGGUCGGCUUAAGGAUAUCGGGCAUGUCCUUGCCCUGUCGCUUCUUGGUCUUCUUCUUCAGGGUUUCAGUGCCC---------GAUUUCUUGCCCUUC .....(((((((.....)))))))(((...((((.(((((((((......((((((.....................))))))....))))))---------))).))))))).... ( -41.10) >DroSim_CAF1 65636 108 - 1 GCCAAGGCCAGGGCACUCUUGGCCGGCUUAACGAUAUCGGGCAUGUCCUUGCCCUGUCGCUUCUUGGUCUUCNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNNNNNN ((((((((((((.....))))))).......(((((..(((((......))))))))))....))))).........................---------............... ( -29.10) >DroEre_CAF1 58347 108 - 1 GCCAAGGCUAGGGCACUCUUGGUAGGCUUAAGGAUAUCGGGCAUGUCCUUGCCCUGUCGCUUUUUGGUCUUCUUUUUCAAGGUUUCAGUGCCC---------GAUUUCUUUGCCUUC ((((((((....))...))))))((((..(((((.(((((((((..(((((....(..(((....)))...).....))))).....))))))---------))).))))))))).. ( -37.80) >DroWil_CAF1 61193 117 - 1 GCCAAGGCGAAGGCACUUUUGGCUGGCUUAAGUAUAUCAGGCAUAUCCUUUCCCUGCCUCUUCUUGGACUUUUUCUUUAGAGUCUCACCACCAGGAUGAUUGGGUUUCUUGCCCUUU ((((.(.(((((....))))).)))))............((((.((((..((((((.........(((((((......)))))))......))))..))..))))....)))).... ( -30.76) >DroYak_CAF1 56076 108 - 1 GCCAAGGCCAGGGCACUCUUGGCAGGCUUAAGGAUAUCGGGCAUGUCCUUUCCCUGUCGCUUUUUGGUCUUCUUUUUCAAGGUUUCAGUGCCC---------GAUUUCUUACCCUUC (((...((((((.....)))))).))).((((((.(((((((((..((((.....(..(((....)))...)......)))).....))))))---------)))))))))...... ( -35.30) >consensus GCCAAGGCCAGGGCACUCUUGGCCGGCUUAAGGAUAUCGGGCAUGUCCUUGCCCUGUCGCUUCUUGGUCUUCUUCUUCAGGGUUUCAGUGCCC_________GAUUUCUUGCCCUUC ((((((((((((.....)))))).(((.(((((((((.....)))))))))....)))....))))))................................................. (-19.07 = -19.05 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:46 2006