Locus 354

Sequence ID 3R_DroMel_CAF1
Location 1,376,912 – 1,377,019
Length 107
Max. P 0.929830
window584

overview

Window 4

Location 1,376,912 – 1,377,019
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.17
Mean single sequence MFE -24.60
Consensus MFE -13.44
Energy contribution -13.56
Covariance contribution 0.12
Combinations/Pair 1.27
Mean z-score -1.96
Structure conservation index 0.55
SVM decision value 1.20
SVM RNA-class probability 0.929830
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1376912 107 - 27905053
---GUAUGAAACUGAUACGGACUU---UCCUAUUCCCAUUCGUACUAGGCGGUUUCUACAAUUUCACUUGACAAUUAUGUCAAAGUCAGGUUCA------GUC-GGUUGUGGAAAUGCUG
---(((((((...((((.((....---.))))))....)))))))..((((.(((((((((((..(((((((............)))))))...------...-))))))))))))))). ( -28.60)
>DroSec_CAF1 3037 101 - 1
---UUAUGAAAAUGAUACGGAUUU---UUCUAU------UCGUACUAGGCGGUUUCUACAAUUUCACUUGACAAUUAUGUCAAAGUCAGGUUCA------GUC-GGUUGUGGAAAUGAUG
---((((....))))(((((((..---....))------))))).......((((((((((((..(((((((............)))))))...------...-)))))))))))).... ( -23.40)
>DroSim_CAF1 3046 104 - 1
CCAAUAUGAAACUGAUACGGAUUU---UCCUAU------UCGUACUAGGCGGUUUCUACAAUUUCACUUGACAAUUAUGUCAAAGUCAGGUUCA------GUC-GGUUGUUGAAAUGCUG
...........(((.(((((((..---....))------))))).)))(((.((((.((((((..(((((((............)))))))...------...-)))))).))))))).. ( -22.90)
>DroEre_CAF1 3179 101 - 1
---AUAUGAAACUGAUUUUCCAAU---UCCCAU------UCGUACUAGGCGGUUUCUACAAUUUCACUUGACAUUAAUGUCAAAGUCAAGUUCA------GUC-GGUUGUGGAAAUACUA
---.((((((...((.........---))...)------))))).(((...((((((((((((..(((((((............)))))))...------...-)))))))))))).))) ( -20.70)
>DroYak_CAF1 2762 90 - 1
--------------GUUUUGUAUU---UACCAU------UCGCACUAGGCGGUUUCUACAAUUUCACUUGACAUUAAUGUCAAAGUGAAGUUUA------GUC-GGUUGUGGAAAUACUA
--------------.....(((((---(.((((------(((.(((((((.((....))...(((((((((((....)))).))))))))))))------)))-))..)))))))))).. ( -28.10)
>DroAna_CAF1 2301 99 - 1
---------------UUCGGGUUUCUACCCCAU------UCGUACUAGGCCACUUUCUCAAUUUCAUUUGACAUUAAUGUCAAAGUCAAAAUCAAAGUCAUUUGGUUUGUGGAAAUCCUA
---------------...((((((((((.....------...........................(((((((....)))))))....((((((((....)))))))))))))))))).. ( -23.90)
>consensus
____UAUGAAACUGAUACGGAUUU___UCCCAU______UCGUACUAGGCGGUUUCUACAAUUUCACUUGACAAUAAUGUCAAAGUCAAGUUCA______GUC_GGUUGUGGAAAUGCUA
........................................(((.....)))((((((((((((..(((((((............))))))).............)))))))))))).... (-13.44 = -13.56 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:05 2006