Locus 3538

Sequence ID 3R_DroMel_CAF1
Location 9,558,742 – 9,558,843
Length 101
Max. P 0.738836
window5689

overview

Window 9

Location 9,558,742 – 9,558,843
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.26
Mean single sequence MFE -29.52
Consensus MFE -19.57
Energy contribution -19.57
Covariance contribution 0.00
Combinations/Pair 1.16
Mean z-score -2.17
Structure conservation index 0.66
SVM decision value 0.44
SVM RNA-class probability 0.738836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9558742 101 - 27905053
GUGUGUUUGUGGAAUUGGAAACAAUUAG---CAAAGUGUGCAGGAGAUUUAGAGCAGAAUGUCAUAGCCCUAAUUGCCCAGGAGCACACACACAC--ACGCAGUGC
((((((((((..(((((....))))).)---))).((((((..((.((((......)))).)).....(((........))).))))))))))))--......... ( -32.30)
>DroPse_CAF1 34554 102 - 1
GUCUGCUUGUGGAAUUGGAAACAAUUAGCAGCAGAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAAGAGCACAUAAGCACACACACA----
.((((((.((..(((((....))))).))))))))((((((.......((((.((.(.....)...)).)))).(((......))).....)))))).....---- ( -32.50)
>DroGri_CAF1 44263 91 - 1
GUGAGCGUGUGCAAUUGAAAACAAUUAG---CAAAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAA--GCAUACAG------UCGCA----
((((..(((((((((((....))))).(---((.....))).((.(..((((.((.(.....)...)).))))...)))..--))))))..------)))).---- ( -23.30)
>DroEre_CAF1 37008 95 - 1
GU--GUUUGUGGAAUUGGAAACAAUUAG---CAAAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAGGAGCACACAC------ACGCAGUGC
((--((((((..(((((....))))).)---))).((((((..((.((((......)))).)).....(((........))).))))))))------))....... ( -28.10)
>DroWil_CAF1 39633 95 - 1
GGGUGUUUGUGCAAUUGGAAACAAUUAG---CAAAGUGUGCUGGAGAUUUAGAGCGGAAUGUCAUGGCCCUAAUUGCCCAGGAGCGCUCACACAU------ACU--
((((((((.((((((((....))))).)---)).......((((.(..((((.((...........)).))))...)))))))))))))......------...-- ( -28.40)
>DroPer_CAF1 34599 100 - 1
GUCUGCUUGUGGAAUUGGAAACAAUUAGCAGCAGAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAAGAGCACAUAAGCACA--CACA----
.((((((.((..(((((....))))).))))))))((((((.......((((.((.(.....)...)).)))).(((......))).....)))))--)...---- ( -32.50)
>consensus
GUGUGCUUGUGGAAUUGGAAACAAUUAG___CAAAGUGUGCAGGAGAUUUAGAGCGGAAUGUCAUAGCCCUAAUUGCCCAAGAGCACACAC_CAC__ACGCA____
.......((((.(((((....))))).........((((((.((.(..((((.((.(.....)...)).))))...)))....)))))).........)))).... (-19.57 = -19.57 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:43 2006