| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,555,649 – 9,555,749 |
| Length | 100 |
| Max. P | 0.542424 |
| Location | 9,555,649 – 9,555,749 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.83 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9555649 100 + 27905053 UACGUACUAUGUA----CGUACU------UGCCAAG--UUGCCGGCAUUUGGCGAAUGUUACGCGAUUUUGAGCGCUCUAAUUGUCCGCUUGUUCACUCGUGUGUCCGUUCG--- (((((((...)))----))))..------.((((((--(.(....))))))))(((((.(((((((...((((((..(.....)..)))))).....)))))))..))))).--- ( -33.00) >DroVir_CAF1 42477 97 + 1 GGCG---------------G--CGACGAGUGCCAAGUUUUGCCGGCAUUUUGCGAGUGUUACGCGACUUUGAGCGCUCUAAUUGUGCGCUUGUUUAGUU-UAUAUACAUGCAGAU (.((---------------(--(((.((.(....).)))))))).)..((((((.((((.....((((.(((((((.(.....).)))))))...))))-...)))).)))))). ( -30.40) >DroGri_CAF1 40206 94 + 1 AUCA-------------UUUUGC------UGCCAAGU-UUGCCGGCAUUUUGCGAGUGUUACGCGACUUUGAGCGCUCUAAUUGUGCGCUUGUUUGGUU-UAUAUACAUGCAUAA ....-------------...(((------((.((...-.)).)))))...((((.((((.....((((.(((((((.(.....).)))))))...))))-...)))).))))... ( -24.30) >DroSec_CAF1 32347 104 + 1 UACGUACUACGUACAUACGUUCU------UGCCAAG--UUGCCGGCAUUUGGCGAGUGUUACGCGACUUUGAGCGCUCUAAUUGUCCGCUUGUUCACUCGUGUGUCCGUUCG--- ..((....(((.((((((.....------.((((((--(.(....))))))))(((((.((.(((((...((....)).....)).))).))..))))))))))).))).))--- ( -30.00) >DroEre_CAF1 34040 94 + 1 UAUGUACUA----------UACU------UGCCAAG--UUGCCGGCAUUUGGCGAGUGUUACGCGACUUUGAGCGCUCUAAUUGUCCGCUUGUUCACUCGUGUGUUCGUUCG--- ........(----------((((------(((((((--(.(....))))))))))))))(((((((...((((((..(.....)..)))))).....)))))))........--- ( -29.30) >DroYak_CAF1 32671 94 + 1 UACGUACUA----------UACU------UGCCAAG--UUGCCGGCAUUUGGCGAGUGUUACGCGACUUUGAGCGCUCUAAUUGUCCGCUUGUUCACUCGUGUGUUCGUUCG--- .(((.((.(----------((((------(((((((--(.(....)))))))))))))).((((((...((((((..(.....)..)))))).....)))))))).)))...--- ( -30.50) >consensus UACGUACUA__________UACU______UGCCAAG__UUGCCGGCAUUUGGCGAGUGUUACGCGACUUUGAGCGCUCUAAUUGUCCGCUUGUUCACUCGUGUGUACGUUCG___ ..............................((((((...((....))))))))(((((.(((((((...((((((..(.....)..)))))).....)))))))..))))).... (-16.30 = -16.83 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:37 2006