Locus 3532

Sequence ID 3R_DroMel_CAF1
Location 9,551,243 – 9,551,335
Length 92
Max. P 0.763698
window5676

overview

Window 6

Location 9,551,243 – 9,551,335
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 82.39
Mean single sequence MFE -28.03
Consensus MFE -20.36
Energy contribution -21.45
Covariance contribution 1.09
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.73
SVM decision value 0.51
SVM RNA-class probability 0.763698
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9551243 92 + 27905053
UAUAGAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGGGAGGUUUCGGGUUGCAAUUAAUGCGCCUUGGUGGCAGUGAACUUGCCGA
.......((((...)))).(((.(((((.((((((((((((((...((........))..)))))))((....))))))))).)))))))). ( -27.40)
>DroSec_CAF1 27855 92 + 1
UAUAUAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGGGUCGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA
.......((((...)))).(((.(((((.((((((..(.(..((.(((((((........)))).)))))..))..)))))).)))))))). ( -32.40)
>DroSim_CAF1 28000 92 + 1
UAUAUAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGAGACGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA
.......((((...)))).(((.(((((.((((((..(...........((((((.(((.....))))))))))..)))))).)))))))). ( -29.10)
>DroEre_CAF1 29567 92 + 1
UAUAGAAGUAUAUAGUACAUGCAUAAGUGCACUGCUGCAUUGGGACGUUUCAGGUUGCAAUGAAUGCUCCUGGGUGGCAGUGAACUUGCCAA
.......((((.......)))).(((((.((((((..(.(..(((.((((((........)))).)))))..))..)))))).))))).... ( -28.60)
>DroYak_CAF1 28290 92 + 1
UAUAGAUGUAUAUAGUACAUGCAUAAGUGCACUGCUGCAUUGGGACGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA
.....((((((...))))))(((..(((.((((((..(.(..((.(((((((........)))).)))))..))..)))))).))))))... ( -30.90)
>DroAna_CAF1 37790 69 + 1
-----------------------UAAGUGCAGUGCCGAUCUGGGACGUUUCAGGUUGCAAUUGCUGCCCCAUUGUGGCAAUGAACUUGCCCC
-----------------------(((((.((.(((((...(((((....)).(((.((....)).))))))...))))).)).))))).... ( -19.80)
>consensus
UAUAGAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGGGACGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA
.......................(((((.(((((((((...........((((((.(((.....)))))))))))))))))).))))).... (-20.36 = -21.45 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:31 2006