| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,551,014 – 9,551,109 |
| Length | 95 |
| Max. P | 0.999758 |
| Location | 9,551,014 – 9,551,109 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -23.42 |
| Energy contribution | -24.43 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.72 |
| SVM decision value | 4.01 |
| SVM RNA-class probability | 0.999758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9551014 95 - 27905053 GAACAAUAGAUGCAGCCAACAGCCGAAGGGCAAGUGAAUGGGGGGUUCUCGAAUAGGAGGCUUCCCAAAGGGGAGCUUCCUGGAGGGAGGGUGGU ............((.((....(((....)))...............((((...(((((((((((((...)))))))))))))..)))))).)).. ( -38.70) >DroSec_CAF1 27639 87 - 1 GAACAAUAGAUGCAGCCAACAGCCGAAGGGCAAGUGAAAGGGGAU--------GGGGGCACUUCCCUAUGGGGAGCUGCCUGGAAGGGGUGAGGU ............((.((....(((....)))..............--------..(((((((((((...)))))).))))).....)).)).... ( -27.60) >DroSim_CAF1 27782 89 - 1 GAACAAUAGAUGCAGCCAACAGCCGAAGGGCAAGUGAAAGGGGAUU------GGGGGACACUUCCCAAGGGGGAGCUGCCUGAAAGGAGCGGUGU ...............((..(.(((....))).........((((..------.(....)...))))..)..)).(((((((....)).))))).. ( -28.90) >DroYak_CAF1 28076 86 - 1 GAACAAUAGAAGCAUCCAACAGCCGAAGGGCAAGUGAAAGGGGGU-UCUCGAA-AGGGGGCUUCCCAAAGGGGGGCUUCCUGUAGGGG------- ..(((...(((((..((....(((....)))........((((((-((((...-.)))))))))).....))..))))).))).....------- ( -34.40) >consensus GAACAAUAGAUGCAGCCAACAGCCGAAGGGCAAGUGAAAGGGGAU_______AGAGGACACUUCCCAAAGGGGAGCUGCCUGGAAGGAG_G_GGU ...............((....(((....))).......................((((((((((((...))))))))))))....))........ (-23.42 = -24.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:30 2006