Locus 3522

Sequence ID 3R_DroMel_CAF1
Location 9,513,361 – 9,513,478
Length 117
Max. P 0.681878
window5663

overview

Window 3

Location 9,513,361 – 9,513,478
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -26.18
Consensus MFE -26.42
Energy contribution -25.74
Covariance contribution -0.68
Combinations/Pair 1.12
Mean z-score -1.14
Structure conservation index 1.01
SVM decision value 0.31
SVM RNA-class probability 0.681878
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9513361 117 - 27905053
AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUUUAUGCUUGACUUCUAUAUC
..((((((((......)))))).((((((((((........))))))))))........))...((((((.....))))))((((.(((((..........)).))).))))..... ( -25.80)
>DroSec_CAF1 142957 117 - 1
AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC
.........((.(((((((((...((((((.(((((.......)))))...........(((((((((((.....)))))..)))))))))))))))))).))).)).......... ( -28.10)
>DroSim_CAF1 133157 117 - 1
AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC
.........((.(((((((((...((((((.(((((.......)))))...........(((((((((((.....)))))..)))))))))))))))))).))).)).......... ( -28.10)
>DroEre_CAF1 150931 117 - 1
AACCGUUCCUCUGGUUAGGGGCUAUUGGCUAGGCUAUGCUACUUGGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC
..((((((((......)))))).((((((((((........))))))))))........))...((((((.....))))))((((.(((((..........)).))).))))..... ( -25.00)
>DroYak_CAF1 144725 117 - 1
AACCGUUCCUCUGGUUAGGGGCUAUUGGCUAGGCUAUGCUACUUGGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCUAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC
.........((.(((((((((((((((((((((........))))))))))........(((((((((((.....))))..))))))))))....))))).))).)).......... ( -23.90)
>consensus
AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC
.........((.(((((((((...((((((.(((((.......)))))...........(((((((((((.....)))))..)))))))))))))))))).))).)).......... (-26.42 = -25.74 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:18 2006