Locus 352

Sequence ID 3R_DroMel_CAF1
Location 1,371,367 – 1,371,466
Length 99
Max. P 0.693986
window581

overview

Window 1

Location 1,371,367 – 1,371,466
Length 99
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 83.67
Mean single sequence MFE -14.61
Consensus MFE -11.43
Energy contribution -11.60
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.78
SVM decision value 0.34
SVM RNA-class probability 0.693986
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1371367 99 - 27905053
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA---ACACUAU-CAAGAA-----------GGC-A--
.((((.(...........((((.....((((((.......))))))....((((....)))).))))...((((((......---)).))))-...).)-----------)))-.-- ( -16.90)
>DroPse_CAF1 4513 93 - 1
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAAUACACACUAA----------------------A--
..(((....)))......((((.....((((((.......))))))....((((....)))).))))....((.(((.....))).))....----------------------.-- ( -12.30)
>DroWil_CAF1 4813 93 - 1
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACUAUACGUAAAAAUGGGUAAAUAA---GCG-------ACAA-----------AAU-A--
.(((((............((((.....((((((.......)))))).......(....)....))))............)))---)).-------....-----------...-.-- ( -12.25)
>DroMoj_CAF1 4920 102 - 1
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA---ACUAUAAGCAACGA-----------ACU-ACA
.(((((............((((.....((((((.......))))))....((((....)))).))))......(((......---))).))))).....-----------...-... ( -16.80)
>DroAna_CAF1 4627 111 - 1
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA---ACAACUU-AAAACAUUCAAACCAAUGGCGA--
...((((....((.....((((.....((((((.......))))))....((((....)))).))))....(((((......---...))))-)...........))....))))-- ( -17.10)
>DroPer_CAF1 4514 93 - 1
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAAUACACACUAA----------------------A--
..(((....)))......((((.....((((((.......))))))....((((....)))).))))....((.(((.....))).))....----------------------.-- ( -12.30)
>consensus
AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA___ACACUAA___A__A_______________A__
..(((....)))......((((.....((((((.......))))))....((((....)))).)))).................................................. (-11.43 = -11.60 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:02 2006