| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,507,469 – 9,507,562 |
| Length | 93 |
| Max. P | 0.649455 |
| Location | 9,507,469 – 9,507,562 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.15 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -13.61 |
| Energy contribution | -13.28 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9507469 93 + 27905053 ----------------AAGUCUGCCAUUUCAAUAUCUGAAGAACUUUCUACUCACAGACCACCAGCAGUAAUCUCACCGCUGUUUGCUGCUCGAAGAGAUUGGUGCUGA ----------------..(((((.....(((.....)))(((....))).....)))))...(((((.(((((((..((..((.....)).))..))))))).))))). ( -24.60) >DroVir_CAF1 178353 90 + 1 ----------------CAUUUUACCA---GAAUAUUUCAAAGGCUUAGUACUUACAGACCACGAGCAGCAAACGCACUGCUGUCUGUUGCUCCAAUAGAUUUGUGCUGA ----------------........((---(.(((..((...((.((.((....)).))))..((((((((.((((...)).)).)))))))).....))..))).))). ( -20.00) >DroSec_CAF1 137168 93 + 1 ----------------AAGUCUGCCAUUUCAAUAUCUGAAAAACUUUCUACUCACAGACCACCAGCAGUAAUCUCACCGCUGUUUGCUGCUCGAAGAGAUUGGUGCUGA ----------------..(((((...(((((.....))))).............)))))...(((((.(((((((..((..((.....)).))..))))))).))))). ( -23.19) >DroSim_CAF1 127339 93 + 1 ----------------AAGUCUGCCAUUUCAAUAUCUGAAGAACAUUCUACUCACAGACCACCAGCAGUAAUCUAACCGCUGUUUGCUGCUCGAAGAGAUUGGUGCUGA ----------------..(((((.....(((.....)))(((....))).....)))))...(((((.((((((...((..((.....)).))...)))))).))))). ( -21.70) >DroYak_CAF1 138738 109 + 1 GUUUUAGCAUCACUGUAUGACUCCAAAUUUGAAAUCUGAAGAUCUUUCUACUCACAGACUACCAGCAGUAAUCUGACCGCUGUUUGCUGCUCGAAGAGAUUGGUGCUGA ...(((((((((((((.((....))..............(((....)))....)))).((.(.((((((((.(........).)))))))).).))....))))))))) ( -24.20) >DroMoj_CAF1 192288 89 + 1 ----------------UAUGAUGCCAAU-GAUUAUUU---AUUCCUUAUACUUACAGACAACGAGCAGCAAUCGCACUGCCGUCUGUUGCUCCAAUAGAUUUGUACUUA ----------------(((((.(..(((-((....))---)))).)))))..((((((....((((((((..((......))..)))))))).......)))))).... ( -14.90) >consensus ________________AAGUCUGCCAUUUCAAUAUCUGAAAAACUUUCUACUCACAGACCACCAGCAGUAAUCUCACCGCUGUUUGCUGCUCGAAGAGAUUGGUGCUGA ......................................................(((..((((((((((((.(........).)))))))((.....)).)))))))). (-13.61 = -13.28 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:01 2006