| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,504,460 – 9,504,568 |
| Length | 108 |
| Max. P | 0.618714 |
| Location | 9,504,460 – 9,504,568 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 86.47 |
| Mean single sequence MFE | -52.78 |
| Consensus MFE | -44.28 |
| Energy contribution | -45.48 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9504460 108 - 27905053 GAGGGCGGUUCGUAGGUGUGGCAGGCGGCUAGGGCUGCCGCCGACUGUUUGGCCCGAAUUUCGGAGGCAGCAGCUGCCGCUUGGCGGGCGAGCUCCUCUGUAAAGGUA---- ((((..(((((((.....((.((((((((.((.(((((((((((....)))))(((.....))).))))))..)))))))))).)).)))))))))))..........---- ( -54.60) >DroSec_CAF1 134199 108 - 1 GAGGGCGGCUCGUAGGCGUGGCAGGCGGCGAGGGCCGCCGCCGACUGUUUGGCCCGAAUUUCGGAGGCAGCAGCUGCCGCUUGGCGGGCGAGCUCCUCUGUAAAGGUA---- ((((((.((((((....(((((((((((((.....)))))))(.(((((.(.((((.....))).).)))))))))))))...))))))..)).))))..........---- ( -55.70) >DroSim_CAF1 124365 108 - 1 GAGGGCGGCUCGUAGGCGUGGCAGGCGGCGAGGGCCGCCGCCGACUGUUUGGCCCGAAUUUCGGAGGCAGCAGCUGCCGCUUGGCGGGCGAGCUCCUCUGUAAAGGUA---- ((((((.((((((....(((((((((((((.....)))))))(.(((((.(.((((.....))).).)))))))))))))...))))))..)).))))..........---- ( -55.70) >DroEre_CAF1 141965 110 - 1 GAGGGCGGCUCGUAGGCGUGGCAGGCGGCUAGGGCCGCAGCCGACUGCUUGGCCCGAAUUUCGGAGGCAGCAGCUGCCGCUUGGCGGGCGAGCUCCUCUGUAAGAGUAAA-- ((((((.((((((....((((((((((((....)))))......(((((.(.((((.....))).).)))))))))))))...))))))..)).))))............-- ( -55.50) >DroWil_CAF1 153519 112 - 1 GUAGGCGGCUCAUACAAAUGGCAGGCGGCCAUGGCAGCUGCGGAUUGUUUGGCGCGUAUAUCAGCAGCAGCAGCAGCAGCUUGUCGGGCUAGUUCCUCUGCAAAGCGGAUGU ....(((((.((.((((.(.((((.(.((....)).))))).).)))).)))).)))(((((.((.((((.((.(((((((.....)))).))).))))))...)).))))) ( -37.60) >DroYak_CAF1 135721 108 - 1 GAGGGCGGCUCGUAGGCGUGGCAGGCGGCUAGGGCCGCCGCCGACUGCUUGGCCCGAAUUUCGGAGGCAGCAGCUGCCGCUUGGCGGGCGAGCUCCUCUGCGAAAUUA---- ((((..(((((((.....((((.((((((....)))))))))).(((((.((((((.....))).(((((...)))))))).))))))))))))))))..........---- ( -57.60) >consensus GAGGGCGGCUCGUAGGCGUGGCAGGCGGCUAGGGCCGCCGCCGACUGUUUGGCCCGAAUUUCGGAGGCAGCAGCUGCCGCUUGGCGGGCGAGCUCCUCUGUAAAGGUA____ .((((.(((((((.....((((.((((((....)))))))))).(((((.((((((.....))).(((((...)))))))).)))))))))))).))))............. (-44.28 = -45.48 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:00 2006