Locus 3511

Sequence ID 3R_DroMel_CAF1
Location 9,497,762 – 9,497,858
Length 96
Max. P 0.978048
window5640

overview

Window 0

Location 9,497,762 – 9,497,858
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.00
Mean single sequence MFE -24.50
Consensus MFE -19.25
Energy contribution -19.42
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.79
SVM decision value 1.80
SVM RNA-class probability 0.978048
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9497762 96 - 27905053
AGGA--------------UCA--ACUCACCCAUUA-------CUCGC-CUAAAUGAAGAAUGAAGAAACAAAAUGUGCGCACGAUAUCCUUGAUCGUGUGUACAUUUACCUAUCUGCUUG
(((.--------------...--.......((((.-------.(((.-.....)))..))))........(((((((((((((((.......))))))))))))))).)))......... ( -25.00)
>DroVir_CAF1 168899 98 - 1
UGCA--------------UGU--UUUUAGCCAAUA-----ACCUCGC-CUAAAUGAAGCAUGAAGAAACAAAAUGUCCGCACGAUAUCCCUGAUCGUGUGUACAUUUACAUAUUUACUUG
..((--------------(((--((((((.(....-----.....).-)))...))))))))........((((((.((((((((.......)))))))).))))))............. ( -21.20)
>DroPse_CAF1 130868 97 - 1
CACA----------------------UUGCCAAUAAAAUAACCUCGU-CUAAAUGAAGAAUGAAGAAACAAAAUGUGCGCACGAUAUCCUUGAUCGUGUGUACAUUUACGUAUCUGCUUG
....----------------------..((.............((((-((......)).))))(((.((.(((((((((((((((.......)))))))))))))))..)).)))))... ( -24.20)
>DroGri_CAF1 168205 98 - 1
UGCA--------------UGU--UUCUAGCCAAUA-----ACCUCGC-CUAAAUGAAGCAUGAAGAAACAAAAUGUGCGCACGAUAUCCCUGAUCGUGUGUACAUUUACAUAUUUACUGG
..((--------------(((--(((.........-----.......-......))))))))........(((((((((((((((.......)))))))))))))))............. ( -27.65)
>DroWil_CAF1 144857 99 - 1
AGAA--------------AUAGUAUUCAACAUAAC-------CUCGCCCUAAAUGAAGAAUGAAGAAACAAAAUGUGCGCACGAUAUCCUUGAUCGUGUGUACAUUUACAUAUUUACUUG
..((--------------(((.(((((..(((...-------..........)))..)))))........(((((((((((((((.......)))))))))))))))...)))))..... ( -23.12)
>DroAna_CAF1 121744 109 - 1
UGCAUCCGCAUCCAUCAAUCA--AC-GACCACAUA-------CUCGC-CUAAAUGAAGAAUGAAGAAACAAAAUGUGCGCACGAUAUCCUUGAUCGUGUGUACAUUUACCUACUUGCUAG
.(((((..(((.(.(((....--.(-((.......-------.))).-.....))).).)))..))....(((((((((((((((.......))))))))))))))).......)))... ( -25.80)
>consensus
UGCA______________UCA__AUUUAGCCAAUA_______CUCGC_CUAAAUGAAGAAUGAAGAAACAAAAUGUGCGCACGAUAUCCUUGAUCGUGUGUACAUUUACAUAUUUACUUG
......................................................................(((((((((((((((.......)))))))))))))))............. (-19.25 = -19.42 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:55 2006