Locus 3508

Sequence ID 3R_DroMel_CAF1
Location 9,481,162 – 9,481,273
Length 111
Max. P 0.727450
window5636

overview

Window 6

Location 9,481,162 – 9,481,273
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 81.35
Mean single sequence MFE -25.52
Consensus MFE -21.08
Energy contribution -20.97
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.83
SVM decision value 0.42
SVM RNA-class probability 0.727450
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9481162 111 - 27905053
UUUCAACUACCUUUAAGUAUGAUAUAGAUUAAAAUCUGAUGAUAACGCUGCUUGCUUUGAUUUUCAGCACCGCGCAAGCACUGGAUUCUUCAGACAUUGGUGGAGGUGAAG
.......((((((((...(((.((.....))...(((((.((...((.(((((((..((.....))((...))))))))).))...)).))))))))...))))))))... ( -26.80)
>DroSec_CAF1 110750 89 - 1
UUUUAACUACCU--AAGUA--------------------UGAUAACGCCGCUUGCUUUUAUUUUCAGCACCGCGCAAGCACUGGAUUCUCCAGACUUUGGUAGAGGUGAAG
......(((((.--((((.--------------------..........((((((..................)))))).((((.....)))))))).)))))........ ( -24.37)
>DroSim_CAF1 100722 89 - 1
UUUCAACUACCU--AAGUA--------------------UGAUAACGCCGCUUGCUUUGAUUUUCAGCACCGCGCAAGCACUGGAUUCUCCAGACUUUGGUGGAGGUAAAG
......(((((.--((((.--------------------..........((((((..((.....))((...)))))))).((((.....)))))))).)))))........ ( -25.40)
>consensus
UUUCAACUACCU__AAGUA____________________UGAUAACGCCGCUUGCUUUGAUUUUCAGCACCGCGCAAGCACUGGAUUCUCCAGACUUUGGUGGAGGUGAAG
......(((((...((((...............................((((((..................)))))).((((.....)))))))).)))))........ (-21.08 = -20.97 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006