| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,454,178 – 9,454,275 |
| Length | 97 |
| Max. P | 0.904055 |
| Location | 9,454,178 – 9,454,275 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.09 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -12.40 |
| Energy contribution | -13.21 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.904055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9454178 97 - 27905053 UUGUAGUGCAUACU-----UUCGGGCGCUGCUUAUAAUUCCGCGCCAGAGUUGUAAAUAUU-UGUUCAAGUAUUUAUUUAUGUACUGCCUGCGCGCGUGUUUC ..(((((((...(.-----...).))))))).........((((((((.((.(((((((((-(....)))))))))).........))))).)))))...... ( -27.50) >DroVir_CAF1 126323 92 - 1 UUGUAGUGCAUCGA-----UUCGGUCGCUGCUUAUAAUUCUACGCCAGAGUUGUGAAUGUUUUUCUCAAGUAUUUAUUUAUAUACCCUACA------UAUCUC .(((((.(((.(((-----(...)))).)))((((((((((.....)))))))))).............((((........)))).)))))------...... ( -17.50) >DroPse_CAF1 84982 99 - 1 UUGUAGUGCAUACUUGUAUUUCGGGCGCUGCUUAUAAUUCCACGCCAGAGUUGUAAAUAUU-UGCUCAAGUAUUUAUUUAUGUACUGCCUCCGCUCGCAU--- ..((((((((((...((((((.(((((....(((((((((.......))))))))).....-))))))))))).....))))))))))............--- ( -25.60) >DroGri_CAF1 124025 91 - 1 UGGUAGUGCAUAGA-----UUCGGGCGCUGCUUAUAAUUCUACAAGAGAGUCGUAAAUGUU-UACUCAAGUAUUUAUUUAUGUACUCUUAC------UGUCUC .((((((((.....-----.....)))))))).............((((((((((((((..-(((....)))..)))))))).))))))..------...... ( -25.90) >DroMoj_CAF1 139722 91 - 1 UUAUAGUGCAUAGA-----UUCCGGCGCUGCUUAUAAUUCAACGCCAAAGUUCAGAAUGUU-UGCUCAAGUAUUUAUUUAUGUACUCUAUG------CCCAUC .....(.(((((((-----....((((.((.........)).))))...((.(((((((..-(((....)))..))))).)).))))))))------).)... ( -20.30) >DroPer_CAF1 86721 99 - 1 UUGUAGUGCAUACUUGCAUUUCGGGCGCUGCUUAUAAUUCCACGCCAGAGUUGUAAAUAUU-UGCUCAAGUAUUUAUUUAUGUACUGCCUCCGCUCGCAU--- ..((((((((((..((((.(((.((((.((..........)))))).))).))))((((..-(((....)))..))))))))))))))............--- ( -25.20) >consensus UUGUAGUGCAUACA_____UUCGGGCGCUGCUUAUAAUUCCACGCCAGAGUUGUAAAUAUU_UGCUCAAGUAUUUAUUUAUGUACUCCCUC______CAU_UC ..(((((((...............)))))))(((((((((.......)))))))))............(((((........)))))................. (-12.40 = -13.21 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:41 2006