Locus 3500

Sequence ID 3R_DroMel_CAF1
Location 9,451,467 – 9,451,586
Length 119
Max. P 0.623294
window5623

overview

Window 3

Location 9,451,467 – 9,451,586
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -23.89
Consensus MFE -17.89
Energy contribution -19.70
Covariance contribution 1.81
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.623294
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9451467 119 - 27905053
UUCUUUCUGUGUAUGCAAUUGGUUGUCAAAUAAUACUU-UUGACAUCCGGCAAUAAUAAAAACUUAUUUCAAAGUUUGUGAAUUUGUCAAAUAAUUGGUUGAACACAUUUCAUUUACUUA
.......(((((...((((..(((((((((.......)-)))))....(((((......((((((......))))))......)))))....)))..)))).)))))............. ( -26.10)
>DroSec_CAF1 81154 119 - 1
UUCUUUCUGUGUGUGCAAUUGGUUGUCAAAUAAUACUU-UUGACAUCCGGCAAUAAUAAAAACUUAUUUCAAAGUUUGCGAAUUUGUCAAAUAAAUGGUUGAACACAUUUCAUUUACUUA
........((((((.(((((((.(((((((.......)-)))))).))(((((......((((((......))))))......)))))........))))).))))))............ ( -28.00)
>DroSim_CAF1 70474 119 - 1
UUCUUUCUGUGUGUACAAUUGGUUGUCAAAUAAUACUU-UUGACAUCCGGCAAUAAUAAAAACUUAAUUCAAAGUUUGUGAAUUUGUCAAAUAAAUGGUUGAACACAUUUCAUUUACUUA
........((((((.(((((((.(((((((.......)-)))))).))(((((......((((((......))))))......)))))........))))).))))))............ ( -28.00)
>DroYak_CAF1 83440 119 - 1
UU-UUUCUGUGUGUGCAACUGGUUUCCAAACACUACUUUUUGACAUCCGGCCAUAAUAAAAACUAUUUUCAAAGUUUGUGAAUUUGUCAAAUAAAUGGGUAAACAAAUUUCAAUUACUUA
..-...(((..(((.(((..(((...........)))..))))))..))).....................((((...(((((((((...............))))).))))...)))). ( -13.46)
>consensus
UUCUUUCUGUGUGUGCAAUUGGUUGUCAAAUAAUACUU_UUGACAUCCGGCAAUAAUAAAAACUUAUUUCAAAGUUUGUGAAUUUGUCAAAUAAAUGGUUGAACACAUUUCAUUUACUUA
........((((((.(((((((.((((((..........)))))).))(((((......((((((......))))))......)))))........))))).))))))............ (-17.89 = -19.70 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:39 2006