| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,353,435 – 1,353,536 |
| Length | 101 |
| Max. P | 0.665158 |
| Location | 1,353,435 – 1,353,536 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.19 |
| Mean single sequence MFE | -30.22 |
| Consensus MFE | -21.53 |
| Energy contribution | -23.20 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1353435 101 + 27905053 GAGGCCCAUUGUUGCGCCACCUGGCGGCAGCCACUGUACACAUUCGGCACUCUCGACUUGGAUACCAUUCCCAUCGCAAGCCCCAACCCACAGUGGGCUUC ((((((((((((...(((....)))(((.(((..((....))...))).....(((...(((......)))..)))...))).......)))))))))))) ( -36.50) >DroSim_CAF1 70 101 + 1 GAGACCCAUUGUUGCGCCACCUGGCGGCAGCCACUGUACACACUCGGCACCCUCGACUUGGAUUCCAAUCCCUUCGCGAGCCCCAACCCACAGAGGGCUUC (((.(((...((((((((....))).)))))..((((........(((...(.(((...((((....))))..))).).))).......)))).)))))). ( -28.56) >DroYak_CAF1 51 87 + 1 GAGGCCCUUUGUUGCGCCACCUGACGAGAGCUACUGUACACA--------------CUUGGAUCCAAUUCCCUUCUCGAGCCCCAACCCACAGAGGGCUUC ((((((((((((............(((((((....)).....--------------...(((......)))..)))))...........)))))))))))) ( -25.60) >consensus GAGGCCCAUUGUUGCGCCACCUGGCGGCAGCCACUGUACACA_UCGGCAC_CUCGACUUGGAUACCAUUCCCUUCGCGAGCCCCAACCCACAGAGGGCUUC ((((((((((((..((((....))))((.(((..((....))...)))...........(((......)))....))............)))))))))))) (-21.53 = -23.20 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:59 2006