Locus 35

Sequence ID 3R_DroMel_CAF1
Location 281,324 – 281,437
Length 113
Max. P 0.650773
window57

overview

Window 7

Location 281,324 – 281,437
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.27
Mean single sequence MFE -35.10
Consensus MFE -25.98
Energy contribution -27.10
Covariance contribution 1.12
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.74
SVM decision value 0.24
SVM RNA-class probability 0.650773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 281324 113 + 27905053
ACUACAGUUGCUUUGCUGUGUCAACGCAGUAGCCACCGCUGGCAUUUUAUUUACGAAACUUA-------UUAAUCGAUUUAUAUGCGCCGGCGUGCCAGUAGGCGAAGCGACCCAGGCCA
......((((((((((((((....)))))).(((...((((((((........(((......-------....)))........((....)))))))))).)))))))))))........ ( -35.50)
>DroSec_CAF1 16558 110 + 1
ACUACAGUUGCUCUGCUGUGGCAACG---UAGCCACCACUGGCAUUUCAUUUACGAAACUUA-------UUAAUCGAUUUAUAUGCGCCACAGUGCCAGUAGGCGAAGCGACCCAGGCCA
......(((((((.((((((((..((---((((((....)))).((((......))))....-------............)))).))))))))(((....)))).))))))........ ( -33.00)
>DroSim_CAF1 17854 113 + 1
ACUACAGUUGCUCUGCUGUGGCAACGCAGUAGCCACCACUGGCAUUUCAUUUACGAAACUUA-------UUAAUCGAUUUAUAUGCGCCAGAGUGCCAGUAGGCGAAGCGACCCAGGCCA
......((((((((((((((....)))))))).(.(((((((((((((((.(((((......-------....)))...)).))).....)))))))))).)).).))))))........ ( -35.50)
>DroEre_CAF1 19284 120 + 1
UUUUCAGCUGCUUGGCUGUGGCCACGCAGUAGCCACCGCUGGCAUUUCAUUUACGAAACUUACGACUUAUUAAUCGAUUUAUAUGCGCCGGCGCACCAGUAGGCGAACCGACCCAGGCCA
..(((.(((((.((((....)))).))))).((((((((((((.((((......))))....(((........)))..........))))))).....)).))))))((......))... ( -36.40)
>consensus
ACUACAGUUGCUCUGCUGUGGCAACGCAGUAGCCACCACUGGCAUUUCAUUUACGAAACUUA_______UUAAUCGAUUUAUAUGCGCCAGAGUGCCAGUAGGCGAAGCGACCCAGGCCA
......((((((((((((((((.........))))).((((((.((((......))))..........................((......)))))))).)))))))))))........ (-25.98 = -27.10 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:55 2006