Locus 3497

Sequence ID 3R_DroMel_CAF1
Location 9,445,442 – 9,445,541
Length 99
Max. P 0.696005
window5620

overview

Window 0

Location 9,445,442 – 9,445,541
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 93.93
Mean single sequence MFE -29.61
Consensus MFE -24.14
Energy contribution -25.18
Covariance contribution 1.04
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.82
SVM decision value 0.34
SVM RNA-class probability 0.696005
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9445442 99 + 27905053
UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCGACCCAGAGGGACGCAAAUCGGUUGGGGGCGAAACGGUUGGUUUGGCCGCA
...(((((((((.......((((((((...((((((........))))))....))))))))....)))))))))(((.((((.....)))).)))... ( -31.60)
>DroSec_CAF1 75060 99 + 1
UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCAACGCAGAGGGACGCAAAUAGGUUGGGGGCAAAUCGGUUGGUUUGUCCGCA
............((((((.(((((((((..((((((........))))))..).))))))))....))))))(.(((((((((....))))))))).). ( -33.30)
>DroSim_CAF1 64385 99 + 1
UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCAACGCAGAGGGAAGCAAAUCGGUUGGGGGCAAAUCGGUUGGUUUGUCCGCA
......((((((.........(((((((..((((((........))))))..).))))))......))))))(.(((((((((....))))))))).). ( -28.06)
>DroEre_CAF1 83246 98 + 1
UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCGAC-CAGAGGGACGCAAAUCGGUUUGGGGCACAUCGGUUGGAUUGGCCGCA
...........(((((...((((((((...((((((........)))))).-..))))))))......)))))(.(((..(((.....)))..))).). ( -26.70)
>DroYak_CAF1 77533 98 + 1
UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACUAGCGAC-CAGAGGGACGCAAAUCGGUUUGGGGCAAAUCGGUUGGUUUGCUCGCA
...........(((((...((((((((...(((((..........))))).-..))))))))......))))).(((((((((....)))))))))... ( -28.40)
>consensus
UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCGAC_CAGAGGGACGCAAAUCGGUUGGGGGCAAAUCGGUUGGUUUGGCCGCA
...(((((((((.......((((((((...((((((........))))))....))))))))....)))))))))((((((((....)))))).))... (-24.14 = -25.18 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:36 2006