| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,440,829 – 9,440,947 |
| Length | 118 |
| Max. P | 0.727073 |
| Location | 9,440,829 – 9,440,947 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.93 |
| Mean single sequence MFE | -31.16 |
| Consensus MFE | -19.40 |
| Energy contribution | -21.68 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.727073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9440829 118 - 27905053 UACAAAUUUGUUGCAUACUUUUGCACACAAUUAGGCUUGAAACUUUAGCGACUUAAUAGCCAAGUUGGCCGCACUGCUUCUGCGGUCAGGUAAGCUGUGUAAAUGUGCUAAUUUCAUU .......((((((((......)))).)))).......(((((..((((((.....(((((..(.(((((((((.......))))))))).)..))))).......))))))))))).. ( -33.50) >DroSec_CAF1 70401 118 - 1 UACAAAUUUGUUGCAUACUUUUGCACACAAUUAGGCUUGAAACUUUGGCGCCUUAAUAGCCAAGUUGGCCGCACUGCUUCUGCGGUCAGGUAAGCUGUGUAAAUGUGCUAAUUUCAUU .......((((((((......)))).)))).......(((((..(((((((....(((((..(.(((((((((.......))))))))).)..)))))......)))))))))))).. ( -35.50) >DroSim_CAF1 59244 99 - 1 UACAAAUUUGUUGCAUACUUUUGCACACAAUUAGGCUUGAAACUUUGG-GCAAUAUCGACCAAUUGGGC--CACUGCUUC-GCGGCCAG---AG-CGUGUAAAGACA----------- ........(((((((......)))((((.....((((..(....((((-..........)))))..)))--)...((((.-.......)---))-)))))...))))----------- ( -22.80) >DroEre_CAF1 78704 115 - 1 UAAAAUGU---UGCAUACUUUAGCACAUAAUUAGACUUGAAACUUUGGCGAUUUAAUAGCCAAGUGGGCCGCACUGCCUCUGCGGUCAGGUAAGCUGUGUAAAUGUGCUAAUUUCAUU ........---........(((((((((...(((.((((..((((.(((.........))))))).(((((((.......)))))))...))))))).....)))))))))....... ( -31.80) >DroYak_CAF1 72491 118 - 1 UCAAAUGUUCUUGCAUAUGCUUGCACAUAAUUAGACUUGAAACUCUGGCGAUUUAAUAGCCAAGUUCGCCGCACUGCUUCUGCGGUCAGGUAAGCUGUGUAAAUGUGCUAAUUUCAUU ...((((.....((((((..(((((((.......((((((((((.((((.........))))))))..(((((.......)))))))))))....)))))))))))))......)))) ( -32.20) >consensus UACAAAUUUGUUGCAUACUUUUGCACACAAUUAGGCUUGAAACUUUGGCGACUUAAUAGCCAAGUUGGCCGCACUGCUUCUGCGGUCAGGUAAGCUGUGUAAAUGUGCUAAUUUCAUU ............(((((..(((((((..................(((((.........)))))...(((((((.......))))))).........)))))))))))).......... (-19.40 = -21.68 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:32 2006