| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,438,722 – 9,438,815 |
| Length | 93 |
| Max. P | 0.550758 |
| Location | 9,438,722 – 9,438,815 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.25 |
| Mean single sequence MFE | -20.78 |
| Consensus MFE | -10.91 |
| Energy contribution | -10.67 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9438722 93 - 27905053 AA-AAUGUGCUAACCACUGAGCAAGCUAAUAACCGAAAUGAGUCAGUGCGUUGGCCAA-----------------AAAUGAAACCGACAACAUUGAUGACAUUUGAAUAAC .(-(((((((((((((((((.((..(........)...))..)))))).))))))((.-----------------.((((..........))))..))))))))....... ( -19.40) >DroSec_CAF1 68350 93 - 1 AA-AAUGUGCUAACCACUGAGCAAGCUAAUAACCGAUAUGAGUCAGUGGGUUGGCCAA-----------------AAACGAAACCGACAACAUUGAUGACAUUUAAAUAAC .(-(((((((((((((((((.((..(........)...))..))))).)))))))...-----------------...((....))............))))))....... ( -18.80) >DroSim_CAF1 56506 93 - 1 AA-AAUGUGUUAACCACUGAGCAAGCUAAUAACCGAUAUGAGUCAGUGGGUUGGCCAA-----------------AAACGAAACCGACAACAUUGAUGACAUUUAAAUAAC .(-(((((((((((((((((.((..(........)...))..)))))))(((((....-----------------........)))))....))))).))))))....... ( -19.90) >DroEre_CAF1 76637 92 - 1 AA-GAUGUGCUAACCACUGAGCAUGCUAAUAAGCGAAGUGAGUCAGUGCCUUGGUCAA------------------AAUGAAAUCGACAAUACUGAUGACAUUUAAAUAAU .(-(((((......((((..((..........))..)))).(((((((.....(((..------------------.........)))..))))))).))))))....... ( -17.90) >DroYak_CAF1 70627 92 - 1 AA-AAUGUGCUAACCACUGAGUAUGCUAAUAGCCGCAAUGAGUCAGUGCGUUGGUCAA------------------AAUGAAAUCGACAAUAUUGAUGACAUUUAAAUAAC ..-..((.((((((((((((.(.(((........)))...).)))))).))))))))(------------------((((..(((((.....)))))..)))))....... ( -23.30) >DroPer_CAF1 68219 109 - 1 AAGCAUGUGCUAGCCACUGAAUAACCCAAUAACCGGGAUGAGUCAGAGCC--AGUCCAAAUGUAAACGGAAUCGAAUACGAAAACGAAAACAGCGCUGGCAUUUGAAUAAC ...((.((((((((..((((....(((.......))).....)))).((.--..(((..........))).(((....)))...........)))))))))).))...... ( -25.40) >consensus AA_AAUGUGCUAACCACUGAGCAAGCUAAUAACCGAAAUGAGUCAGUGCGUUGGCCAA_________________AAACGAAACCGACAACAUUGAUGACAUUUAAAUAAC ...(((((((((((((((((.((..(........)...))..)))))).)))))).......................((....))............)))))........ (-10.91 = -10.67 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:31 2006