Locus 349

Sequence ID 3R_DroMel_CAF1
Location 1,350,007 – 1,350,099
Length 92
Max. P 0.834947
window577 window578

overview

Window 7

Location 1,350,007 – 1,350,099
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 84.39
Mean single sequence MFE -18.70
Consensus MFE -14.54
Energy contribution -14.77
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -1.58
Structure conservation index 0.78
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1350007 92 + 27905053
UAUCUUAAGGGACGUUUUCUCAAUGUAACUAUGAAUUAUAUUAUCUGUUAGUAAGGGCUAACAUGAACUAAUGAAAUCGCUCCUAAAUAUAG
.......(((..((.((((..(((((((.......))))))).(((((((((....))))))).))......)))).))..)))........ ( -18.30)
>DroSec_CAF1 14002 85 + 1
UAUCUUAAGGGUCGAUUUCUCAAUGUAACUCUGAGUUGUAUUAUCUGUCAGAAAGGGUUAACAUAAGAUUUAGAAAUCGCUCCUA-------
.......(((..((((((((..((((((((((...(((.((.....)))))..)))))).)))).......))))))))..))).------- ( -20.40)
>DroSim_CAF1 14025 85 + 1
UAUCUUAAGGGUCGAUUUCUCAAUGUAACUAUGAGUUGUAUUAUCUGUCAGAAAGGGCUAACAUAAGAUUUAGAAAUCGCUCCUA-------
.......(((..((((((((.((((((((.....))))))))....(((......))).............))))))))..))).------- ( -17.40)
>consensus
UAUCUUAAGGGUCGAUUUCUCAAUGUAACUAUGAGUUGUAUUAUCUGUCAGAAAGGGCUAACAUAAGAUUUAGAAAUCGCUCCUA_______
.......(((..(((((((..((((((((.....))))))))...(((.((......)).))).........)))))))..)))........ (-14.54 = -14.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 1,350,007 – 1,350,099
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 84.39
Mean single sequence MFE -17.24
Consensus MFE -15.01
Energy contribution -15.23
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -1.80
Structure conservation index 0.87
SVM decision value 0.73
SVM RNA-class probability 0.834947
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1350007 92 - 27905053
CUAUAUUUAGGAGCGAUUUCAUUAGUUCAUGUUAGCCCUUACUAACAGAUAAUAUAAUUCAUAGUUACAUUGAGAAAACGUCCCUUAAGAUA
...((((((((..((.((((......((.((((((......))))))))((((.((((.....)))).)))).)))).))..)))..))))) ( -16.30)
>DroSec_CAF1 14002 85 - 1
-------UAGGAGCGAUUUCUAAAUCUUAUGUUAACCCUUUCUGACAGAUAAUACAACUCAGAGUUACAUUGAGAAAUCGACCCUUAAGAUA
-------.(((..((((((((.......((((.(((....(((((.............))))))))))))..))))))))..)))....... ( -17.42)
>DroSim_CAF1 14025 85 - 1
-------UAGGAGCGAUUUCUAAAUCUUAUGUUAGCCCUUUCUGACAGAUAAUACAACUCAUAGUUACAUUGAGAAAUCGACCCUUAAGAUA
-------.(((..((((((((........((((((......))))))..((((..(((.....)))..))))))))))))..)))....... ( -18.00)
>consensus
_______UAGGAGCGAUUUCUAAAUCUUAUGUUAGCCCUUUCUGACAGAUAAUACAACUCAUAGUUACAUUGAGAAAUCGACCCUUAAGAUA
........(((..(((((((.........((((((......))))))..((((..(((.....)))..)))).)))))))..)))....... (-15.01 = -15.23 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:58 2006