Locus 3487

Sequence ID 3R_DroMel_CAF1
Location 9,419,694 – 9,419,801
Length 107
Max. P 0.730110
window5605

overview

Window 5

Location 9,419,694 – 9,419,801
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -22.30
Consensus MFE -14.46
Energy contribution -14.52
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.65
SVM decision value 0.42
SVM RNA-class probability 0.730110
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9419694 107 - 27905053
CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CAUA----UGUGGUUGUAUGUUCACGCC------GACAUGGGCAAAU
((((.....((((..(((((((((((((.....)))))))......))))))..))))..(((((....(---((((----(......))))))....)))------))..))))..... ( -25.80)
>DroPse_CAF1 49727 111 - 1
CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACAGCACAAACAAGCGCA-CAG--CACACACGCC------GACACGGGCACAU
(((......((((..(((((((((((((.....)))))))......))))))..))))..(((((.....((........))((.-..)--)......)))------))...)))..... ( -23.00)
>DroSec_CAF1 49273 106 - 1
CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CAUA----UGUA-UUGUCUGUACACGCC------GACAUGGGCAAAU
.........((((..(((((((((((((.....)))))))......))))))..))))....((((((((---....----))).-))))).......(((------......))).... ( -22.60)
>DroWil_CAF1 54014 99 - 1
CCCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CAUG----CAU--------AUACACAGUGACUAAGACAUGG------
.(((.....((((..(((((((((((((.....)))))))......))))))..))))((((((((....---..))----)..--------.....))))).........)))------ ( -18.91)
>DroAna_CAF1 46345 91 - 1
CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CA--------------------CACGCC------GACAGGGGCACAU
(((......((((..(((((((((((((.....)))))))......))))))..))))..(((((.....---..--------------------...)))------))..)))...... ( -20.50)
>DroPer_CAF1 50346 111 - 1
CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACAGCACAAACAAGCGCA-CAG--CACACACGCC------GACACGGGCACAA
(((......((((..(((((((((((((.....)))))))......))))))..))))..(((((.....((........))((.-..)--)......)))------))...)))..... ( -23.00)
>consensus
CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA___CAUA____CGUA___G___AUACACGCC______GACAUGGGCACAU
.((((....((((..(((((((((((((.....)))))))......))))))..))))..))))..................................(((............))).... (-14.46 = -14.52 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:22 2006