| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,418,505 – 9,418,601 |
| Length | 96 |
| Max. P | 0.703813 |
| Location | 9,418,505 – 9,418,601 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.71 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -11.67 |
| Energy contribution | -12.87 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9418505 96 + 27905053 A------GUGAGUACUUCGAUUGAAUUUAAUGCCAACACCAUUGGCGUUUGUUUUUAAAUUUAAAGCUCGCUAAUUGAAGCCAAUGCUAAUGCCUUCAUUCA (------((((((.......(((((...((((((((.....))))))))....))))).......)))))))...(((((.((.......)).))))).... ( -22.14) >DroPse_CAF1 48865 95 + 1 AACGAAUGUGAAAAUGCGGGUUAAAUUUAAUGCCAACACCAUUUGUAUUUGUU-UC------AAAGUCCGCUAAUUGUGGCCAAUGCAAAUUGUUUAAUACA ((((((((..((..((..(((..........)))..))...))..))))))))-..------...(.((((.....)))).).................... ( -16.10) >DroSec_CAF1 48059 95 + 1 A------GUGAGUACUACGAUUGAAUUUAAUGCCAACACCAUUGGCGUUUGUU-UUAAAUUUAAAGCUCGCUAAUUGAAGGCAAUGCUAAUGCCUUCAUUCA (------((((((.......(((((...((((((((.....))))))))...)-)))).......)))))))...((((((((.......)))))))).... ( -29.94) >DroEre_CAF1 49569 94 + 1 A------G-GGGCAUAACGACUGAAUUUAAUGGCAACACCAUUGACGUUUGGU-UUAAAUUUAAAGCUCGCUAAUUGAAGGCAAUGCUAAUGCCUUCAUUCA (------(-((((.....(((..((((((((((.....))))))).)))..))-)..........)))).))...((((((((.......)))))))).... ( -24.96) >DroYak_CAF1 50568 95 + 1 A------GAGGGCGUAACGACUGAAUUUAAUGCCAACACCAUUGACGUUUGUU-UUACAUUUAAAGCCCGCUAAUUGAAGGCAACGCUAAUGCCUUCAUUCA (------(.((((........((((...((((.(((.....))).))))...)-)))........)))).))...((((((((.......)))))))).... ( -22.79) >DroPer_CAF1 49466 95 + 1 GCCGAAUGUGAAAAUGCGGGUUGAAUUUAAUGCCAACACCAUUUGCAUUUGUU-UC------AAAGUCCGCUAAUUGUGGCCAAUGCAAAUUGUUUAGUACA ((((...((......((((((((((...(((((.((.....)).)))))...)-))------))..)))))..))..))))((((....))))......... ( -18.90) >consensus A______GUGAGAAUAACGAUUGAAUUUAAUGCCAACACCAUUGGCGUUUGUU_UUAAAUUUAAAGCCCGCUAAUUGAAGCCAAUGCUAAUGCCUUCAUUCA .......((((((........(((....((((((((.....)))))))).....)))........))))))....((((((((.......)))))))).... (-11.67 = -12.87 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:21 2006