| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,409,492 – 9,409,587 |
| Length | 95 |
| Max. P | 0.524667 |
| Location | 9,409,492 – 9,409,587 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 79.47 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.85 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9409492 95 + 27905053 AGGUGAGUUAUUCUAGACUCUGUAGAUUGCCAUCGGGCAGUUUAAACUCACUGCAGACCCUUCACCAUUGUGAAAAAUGUUCCCUAUAACGCAGG .((((((((......)))))..(((((((((....))))))))).)))..((((......(((((....)))))....(((......))))))). ( -24.10) >DroSec_CAF1 39049 95 + 1 AGGUGAGUUAUUCUAGACUCUAUAGAUUGCCAUCGGGCAGUUUAAACUUACUGCAGACCCUUCACAGUUGUGAAAAAUGUUCAUUUCGAAGCAGG (((((((((......)))))..(((((((((....))))))))).)))).((((......(((((....))))).....(((.....))))))). ( -26.30) >DroEre_CAF1 40102 80 + 1 AGGUGAGUUAUUUUAGACUCUGUUGAUUGCCAUCAGGCAGUUUAAACUUACUGCAGACCGUUCACCAUU--------UGUUUUGUUUU------- .((((((((......)))(((((.(((((((....)))))))..........)))))....)))))...--------...........------- ( -19.40) >DroYak_CAF1 41185 95 + 1 AGGUGAGUUAUUUCAGACUCUGUAGAUUGCCAUCAGGCAGUUUGAACUUACAGCAGACCCUUCACCAUUGUAUAAAAUGUUUCCCUUGGGGCAGG .((((((((......)))(((((((((((((....)))))))).........)))))....)))))...........(((..(....)..))).. ( -23.70) >consensus AGGUGAGUUAUUCUAGACUCUGUAGAUUGCCAUCAGGCAGUUUAAACUUACUGCAGACCCUUCACCAUUGUGAAAAAUGUUCCCUUUGA_GCAGG .((((((((......)))))..(((((((((....)))))))))............))).................................... (-16.79 = -16.85 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:16 2006