Locus 3481

Sequence ID 3R_DroMel_CAF1
Location 9,409,206 – 9,409,318
Length 112
Max. P 0.508004
window5599

overview

Window 9

Location 9,409,206 – 9,409,318
Length 112
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 83.57
Mean single sequence MFE -33.32
Consensus MFE -22.41
Energy contribution -23.30
Covariance contribution 0.89
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.508004
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9409206 112 - 27905053
AACUGGCAGGAUGUCACUGUUGCAA----CUACGUGGCAACAACAAUAAGCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC-CAAAAACACCCGAAC
....(((.(((((........((((----(..((((((...........))...((((((((((.....)))))))))).))))..))))))))))..)))-............... ( -32.50)
>DroPse_CAF1 40215 102 - 1
AACUGGCAGCAUGUCACUGCUGCAA----CAAACCAGCAACAACAAUAACCAAUGACUUCAAUUUUGUUGAUUGGAGUCGCACAAGCUUGUC---AGGGCCAG--------GCCAAC
..((((((((.((((..(((((...----.....)))))...............((((((((((.....))))))))))).))).)).))))---))(((...--------)))... ( -32.70)
>DroSec_CAF1 38774 112 - 1
AACUGGCAGGAUGUCACUGUUGCAA----CUACGUGGCAACAACAAUAAGCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC-CAAAAACACUCAAAC
....(((.(((((........((((----(..((((((...........))...((((((((((.....)))))))))).))))..))))))))))..)))-............... ( -32.50)
>DroEre_CAF1 39814 116 - 1
AACUGGCAGGAUGUCACUGUUGCAACUACGUACGUGGCAGCAACAAUAACCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC-CAAAAGCACCCAAAC
....(((.(((((....((((((..((((....))))..))))))((((((..(((((((((((.....))))))))))).....)))))))))))..)))-............... ( -37.70)
>DroYak_CAF1 40901 112 - 1
AACUGGCAGGAUGUCACUGUUGCAA----GUACGUGGCAACAACAAUAACCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGUC-CAAAAACACCCAAAC
.(((.((((.(......).)))).)----))....(((.(((((.....((..(((((((((((.....)))))))))))...)).))))).)))(((((.-.......)))))... ( -31.80)
>DroPer_CAF1 40684 102 - 1
AACUGGCAGCAUGUCACUGCUGCAA----CAAACCAGCAACAACAAUAACCAAUGACUUCAAUUUUGUUGAUUGGAGUCGCACAAGCUUGUC---AGGGCCAG--------GCCAAC
..((((((((.((((..(((((...----.....)))))...............((((((((((.....))))))))))).))).)).))))---))(((...--------)))... ( -32.70)
>consensus
AACUGGCAGGAUGUCACUGUUGCAA____CUACGUGGCAACAACAAUAACCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC_CAAAAACACCCAAAC
....(((..((((.((.((((((.............))))))............((((((((((.....)))))))))).........)).))))...)))................ (-22.41 = -23.30 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:15 2006