Locus 348

Sequence ID 3R_DroMel_CAF1
Location 1,349,065 – 1,349,155
Length 90
Max. P 0.551607
window576

overview

Window 6

Location 1,349,065 – 1,349,155
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 82.41
Mean single sequence MFE -30.95
Consensus MFE -19.48
Energy contribution -20.53
Covariance contribution 1.06
Combinations/Pair 1.11
Mean z-score -1.86
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.551607
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1349065 90 - 27905053
AUGUCACAGCGCAGGCGUGGCUCAGCUUUGGUCCAGCUUGG--AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGAAUUUUCGGAG
..(((((.((....)))))))....(((((((((.((((..--.(((((((.....))))))).))))((....))...)))....)))))) ( -26.60)
>DroSec_CAF1 12971 90 - 1
AUGCCACAGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG--AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGUAUUUUCGGAG
(((((..(((.(((((.((((((......))))))))))).--.(((((((.....)))))))...........)))..)))))........ ( -33.60)
>DroSim_CAF1 12998 90 - 1
AUGCCACAGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG--AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGGAUUUUUGGAG
........((.(((((.((((((......))))))))))).--.(((((((.....)))))))...)).((((((((....))))))))... ( -35.20)
>DroEre_CAF1 13210 89 - 1
AUGCGACUGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG--AAAGCUCAGUCGGGGAGCUUAAAGCGCAAAAGUUAAGGGAUUUUU-GGG
.(.((((((.((((((.((((((......))))))))))..--...)).)))))).)..((.....)).((((((((....)))))))-).. ( -30.90)
>DroYak_CAF1 13808 89 - 1
AUGAGACUGCGCAGGCGUGGCUUAGCUUUGCACCAGCUUGG--AAAGCUCACUCGGGGAGCUUAAAGCCCAAAAGUUAGGGAUUUUUA-GGG
.((((((..((....))..)(((((((((......((((..--.((((((.(....))))))).))))...)))))))))...)))))-... ( -23.90)
>DroAna_CAF1 14717 92 - 1
AUCCGAGGGCGCAGGCGUGGCUCAGCUUUGGGAUAACUUCAAAAAAGCUCCGCCCGAACGCUUAAAGCUCAAAAGCUGCGCCAAAAAAGGAG
.(((...((((((((((((((..((((((..((.....))...))))))..)))...))))))..((((....)))))))))......))). ( -35.50)
>consensus
AUGCCACAGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG__AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGAAUUUUAGGAG
........((.(((((.((((((......)))))))))))....((((((.......))))))...))........................ (-19.48 = -20.53 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:57 2006