Locus 3479

Sequence ID 3R_DroMel_CAF1
Location 9,408,373 – 9,408,480
Length 107
Max. P 0.973936
window5596

overview

Window 6

Location 9,408,373 – 9,408,480
Length 107
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -24.98
Consensus MFE -14.30
Energy contribution -16.12
Covariance contribution 1.82
Combinations/Pair 1.05
Mean z-score -2.34
Structure conservation index 0.57
SVM decision value 1.72
SVM RNA-class probability 0.973936
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9408373 107 + 27905053
AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA
.(((.....(((.(((..(((.((((((((.......)).))))))..........))).))).)))....)))....(((.-..((((((....))))))...))). ( -27.50)
>DroSec_CAF1 37731 107 + 1
AUGUAGGUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAACCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA
.....(((.(((.(((....)))(((((((.......)).)))))...............))).)))...........(((.-..((((((....))))))...))). ( -27.40)
>DroSim_CAF1 39507 107 + 1
AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGNNN-NNNNNNNNNNNNNNNNNNNNNNNNN
.(((.....(((.(((..(((.((((((((.......)).))))))..........))).))).)))....)))........-......................... ( -14.10)
>DroEre_CAF1 39031 107 + 1
GAGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA
.........(((.(((..(((.((((((((.......)).))))))..........))).))).)))...........(((.-..((((((....))))))...))). ( -26.80)
>DroWil_CAF1 35136 86 + 1
----UUGGUGCUG---UGGCAGUGGUUUGUUCAAAAUA--------------AAAACCAUCGCGUAGAAAAACA-AACGCGCAGAGUGCAAACAUUUGCACGCACGCA
----...((((((---((((.(((((((..........--------------.))))))).))((......)).-....))))..((((((....))))))))))... ( -25.80)
>DroYak_CAF1 40085 107 + 1
AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUUCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA
.(((.....(((.(((..(((.((((((((.......)).))))))..........))).))).)))....)))....(((.-..((((((....))))))...))). ( -28.30)
>consensus
AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG_GAGUGCAAACAUUUGCACGCACGCA
.......(((((.((...((((........))))...))..)))))................................(((....((((((....))))))...))). (-14.30 = -16.12 +   1.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:13 2006