| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,406,538 – 9,406,638 |
| Length | 100 |
| Max. P | 0.644224 |
| Location | 9,406,538 – 9,406,638 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -15.84 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9406538 100 + 27905053 UAUUGUGCGAAUCGUGAUGCCAACCUCCGGAGCACCGUAUUUGUAUUGAUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAU (((.((((...(((.((........))))).)))).)))...((((..((((..((((..((((..(((....)))..))))..))))..))))..)))) ( -32.70) >DroSec_CAF1 35963 82 + 1 UAUUGUGCGAAUCGUGAUGCCAACCUAUGGAGCACCGUAUUCGUAUUGGUAUUG------------GUAUUGGCAAUGGUAUUGGU------AUUGGUAU ......((((((((((...(((.....)))..)).)).))))))((..((((..------------(((((......)))))..))------))..)).. ( -22.80) >DroSim_CAF1 37729 88 + 1 UAUUGUGCGAAUCGUGAUGCCAACCUCCGGAGCACCGUAUUCGUAUUGGUAUUG------------GUAUUGGCAAUGGUAUUGGUAUUGGUAUUGGUAU ....((((...(((.((........))))).)))).((((..((((..((((..------------(((((......)))))..))))..))))..)))) ( -23.50) >consensus UAUUGUGCGAAUCGUGAUGCCAACCUCCGGAGCACCGUAUUCGUAUUGGUAUUG____________GUAUUGGCAAUGGUAUUGGUAUUGGUAUUGGUAU ((((((((((((((((...((.......))..)).)).)))))))(..((((..(((....)))..))))..))))))((((..(((....)))..)))) (-15.84 = -16.10 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:12 2006