Locus 347

Sequence ID 3R_DroMel_CAF1
Location 1,345,535 – 1,345,626
Length 91
Max. P 0.697635
window575

overview

Window 5

Location 1,345,535 – 1,345,626
Length 91
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 69.17
Mean single sequence MFE -27.96
Consensus MFE -11.98
Energy contribution -12.58
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.43
SVM decision value 0.34
SVM RNA-class probability 0.697635
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1345535 91 + 27905053
AGCUGAAUUGAGCAGCUGGUGGGGA----UUUUGUGGAAGGGGGGGCGGUAAAGUG--GCC-GGGGUUGGCGCCUGGGA--GCGCCAGCAAUUAACAUAA
(((((.......))))).(((..((----((...............((((......--)))-)..((((((((......--))))))))))))..))).. ( -28.80)
>DroSec_CAF1 9484 91 + 1
ACCUGAAUUGAGCAGCUGGUGGGGA----UUUGGCGGCAGGGGGGGCAAAAAAGUG--GGC-GGGGUUGGCGCCUGGGA--GCGCCAGCAAUUAACAUAA
.((((......((.((..(......----.)..)).)).......((......)).--..)-)))((((((((......--))))))))........... ( -26.50)
>DroSim_CAF1 9457 91 + 1
AACUGAAUUGAGCAGAUGGCGGGGA----UUUUGCGGCAGGG-GGGCAGAAAAGUG--GGGGGGGGUUGGCGCCUGGGA--GCGCCAGCAAUUAACAUAA
..(((..(((.(((((.........----.)))))..)))..-...)))....(((--..((...((((((((......--))))))))..))..))).. ( -25.80)
>DroEre_CAF1 9875 75 + 1
AGCUGAAUGGAGCAGCUGGUGGGCA----------------AGGGGUAGAAAAGUG--GGC-GGCGAUGGCCC----AG--GCGCCAGCAAUUAACAUAA
.(((......))).(((((((.((.----------------....)).......((--(((-.......))))----).--.)))))))........... ( -23.50)
>DroAna_CAF1 10276 94 + 1
UGCGAAA---ACCAUCUGCUUUGGGAGGAGUUCUCACAAG-C-GGAUAAAAGGAUGGCGCC-GAGGAUGGCGCCGAGGAUGGCGCCACCAAUUAACAUAA
.(((..(---.((((((((((((((((...)))))).)))-)-))))....)).)..))).-..((.(((((((......)))))))))........... ( -35.20)
>consensus
AGCUGAAUUGAGCAGCUGGUGGGGA____UUUUGCGGAAGGGGGGGCAGAAAAGUG__GGC_GGGGUUGGCGCCUGGGA__GCGCCAGCAAUUAACAUAA
.................................................................((((((((........))))))))........... (-11.98 = -12.58 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006