Locus 3468

Sequence ID 3R_DroMel_CAF1
Location 9,367,502 – 9,367,597
Length 95
Max. P 0.897659
window5564

overview

Window 4

Location 9,367,502 – 9,367,597
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.70
Mean single sequence MFE -27.07
Consensus MFE -23.17
Energy contribution -23.32
Covariance contribution 0.14
Combinations/Pair 1.21
Mean z-score -2.17
Structure conservation index 0.86
SVM decision value 1.00
SVM RNA-class probability 0.897659
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9367502 95 - 27905053
UGCCUGCGAACUGAAAGGCAUCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG--AGCAGUGAAUGUGA---GC--U
((((.((...(((..((.(((........))).))..))).))))))....(((...(((((((((.((((......)--.)))))))))))))---))--. ( -27.50)
>DroSec_CAF1 136825 95 - 1
GGCCUGCGAACUGAAAGGCAGCCAAAAAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG--ACCAGUGAAUGUGA---GU--U
.((((((...((....))((((((......)))))))))).))(((.....)))...(((((((((.((.........--..))))))))))).---..--. ( -25.50)
>DroSim_CAF1 145933 95 - 1
UGCCUGCGAACUGAAAGGCAGCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG--AGCAGUGAAUGUGA---GU--U
.((((((...((....))((((((......)))))))))).))(((.....)))...(((((((((.((((......)--.)))))))))))).---..--. ( -30.20)
>DroEre_CAF1 137534 95 - 1
UGCCUGCGAACUGAAAGGCAGCCACACAAAUGGCUGGUAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUAAG--AGCAGUGAAUGUGA---GC--A
((((.((...((....))((((((......)))))).....))))))...((((...(((((((((.((((......)--.)))))))))))))---))--) ( -29.90)
>DroYak_CAF1 137979 97 - 1
UGCCUGCGAACUGAAAGGCAGCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAGAAAGCGGUGAAUGUGA---GC--U
(((((((...((....))((((((......)))))))))....))))....(((...(((((((((.(((...........)))))))))))))---))--. ( -28.70)
>DroAna_CAF1 132196 97 - 1
AGCCUGCGAAAUGAAAGGCGAGCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUAU--AGUGAG--AGUGGUUAG-GUGGAUAGUUGU
.((((..........))))..((((.....((.(((((((((..(....)..)))).(((.(((((....--.)))))--.))))))))-.)).....)))) ( -20.60)
>consensus
UGCCUGCGAACUGAAAGGCAGCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG__AGCAGUGAAUGUGA___GC__U
.((((((...((....))((((((......)))))))))).))(((.....)))...(((((((((.(((...........))))))))))))......... (-23.17 = -23.32 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:44 2006