| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,365,136 – 9,365,226 |
| Length | 90 |
| Max. P | 0.914099 |
| Location | 9,365,136 – 9,365,226 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 85.14 |
| Mean single sequence MFE | -22.65 |
| Consensus MFE | -18.67 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.914099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9365136 90 - 27905053 UUCAACUCGAGUCGAGCCGAAAGUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCGGCCUGCACACAUGAGCAA--ACUCACU-------------- ........((((...(((((..((((((((....))))))))((((((........))))))))))).(((........))).--))))...-------------- ( -24.40) >DroPse_CAF1 130497 97 - 1 --C---ACU--GCUAGCCGAAACUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCAGCAUGCACACAUGAGCAC--ACUCGCUCCCACACUCACACA --.---..(--(((((.......(((((((....))))))))))))).(((((....(((.....))))))))....((((..--....))))............. ( -21.41) >DroSec_CAF1 134490 90 - 1 UUCAACUCGAGCCGAGCCGAAAGUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCGGCCUGCACACAUGAGCAA--ACUCACU-------------- ..........((.(.(((((..((((((((....))))))))((((((........)))))))))))).)).....((((...--.))))..-------------- ( -24.40) >DroSim_CAF1 143585 90 - 1 UUCAACUCGAGCCGAGCCGAAAGUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCGGCCUGCACACAUGAGCAA--ACUCACU-------------- ..........((.(.(((((..((((((((....))))))))((((((........)))))))))))).)).....((((...--.))))..-------------- ( -24.40) >DroEre_CAF1 135264 90 - 1 UUCAGCCCGAGUUGAGUCGAAAGUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCGGCCUGCACACAUGAGCAA--ACUCACU-------------- ........(((((..(((((..((((((((....))))))))((((((........))))))))))).(((........))))--))))...-------------- ( -23.20) >DroAna_CAF1 129788 87 - 1 UUC---CCCAGU--AGCCGAAAGUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCAGCCUGCACACAUGAGCACACACUCACU-------------- ...---......--....(..(((((((((....)))))))))..)..(((((...(((....)))..)))))...((((......))))..-------------- ( -18.10) >consensus UUCAACUCGAGUCGAGCCGAAAGUGCAUUAAAAUUAAUGCAUUAGCAAGUGCAACAUUGUUAUCGGCCUGCACACAUGAGCAA__ACUCACU______________ ..........((.(.(((((..((((((((....))))))))((((((........)))))))))))).)).....((((......))))................ (-18.67 = -19.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:41 2006