| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,365,005 – 9,365,099 |
| Length | 94 |
| Max. P | 0.914354 |
| Location | 9,365,005 – 9,365,099 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 97.87 |
| Mean single sequence MFE | -16.37 |
| Consensus MFE | -16.15 |
| Energy contribution | -15.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.914354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9365005 94 - 27905053 CCUACCAACAUACAUGUGCAUCUAUGUAGCAAUGGCCAUAUAGCCGUAUAGCCCUAGGGCCCACACGCCCCAAUCCCAACCCCGCCUCAUACAC ...............(((....((((..((.(((((......))))).........((((......)))).............))..))))))) ( -17.80) >DroSec_CAF1 134359 94 - 1 CCUACCAACAUACAUGUGCAUCUAUGUAGCAAUGGCCAUAUAGCCGUAUAGCCCUAGGGCCCACACGCCCCAAUCCCAACCCCUACUCAUACAC ..............(((((..((((((.((....)).))))))..)))))......((((......))))........................ ( -16.50) >DroSim_CAF1 143454 94 - 1 CCUACCAACAUACAUGUGCAUCUAUGUAGCAAUGGCCAUAUAGCCGUAUAGCCCUAGGGUCCACACGCCCCAAUCCCAACCCCUACUCAUACAC ..............(((((..((((((.((....)).))))))..)))))......((((......))))........................ ( -14.80) >consensus CCUACCAACAUACAUGUGCAUCUAUGUAGCAAUGGCCAUAUAGCCGUAUAGCCCUAGGGCCCACACGCCCCAAUCCCAACCCCUACUCAUACAC ..............(((((..((((((.((....)).))))))..)))))......((((......))))........................ (-16.15 = -15.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:40 2006