| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,364,883 – 9,364,984 |
| Length | 101 |
| Max. P | 0.964131 |
| Location | 9,364,883 – 9,364,984 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -24.90 |
| Energy contribution | -25.23 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9364883 101 + 27905053 -------------------CAAGAGCGCGGCAUAGUAUGCCACACAAAUGCUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGUUGUAUGGG -------------------..(.((((((((((...))))).((((............(..((((((........))))))..)...(((((.....))))).)))).))))).)..... ( -26.30) >DroPse_CAF1 130201 120 + 1 CAGUGGCAGGGCGCUGUGGCAGGAGCGCGGCAUAGUAUGCCACACAAAUGUUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGUUAUAUGGG ..((.((((....)))).))...((((((((((...))))).((((............(..((((((........))))))..)...(((((.....))))).)))).)))))....... ( -33.30) >DroEre_CAF1 134990 101 + 1 -------------------CAAGAGCGCGGCAUAGUAUGCCACACAAAUGCUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGUUGUAUGGG -------------------..(.((((((((((...))))).((((............(..((((((........))))))..)...(((((.....))))).)))).))))).)..... ( -26.30) >DroWil_CAF1 134944 100 + 1 --------------------GAACGCGCGGCAUAGUAUGCCACACAAAUGUUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGGUAUAUGGG --------------------..............(((((((((.((.((((((..((((.(((((((........)))))))((....))))))....)))))).)).)))))))))... ( -25.30) >DroAna_CAF1 129491 101 + 1 -------------------CAAGAGCGCGGCAGAGUAUGCCACACAAAUGCUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGUUAUAUGGG -------------------((..(((((((((.....)))).((((............(..((((((........))))))..)...(((((.....))))).)))).)))))...)).. ( -26.80) >DroPer_CAF1 135904 120 + 1 CAGUGGCAGGGAGCUGUGGCAGGAGCGCGGCAUAGUAUGCCACACAAAUGUUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGUUAUAUGGG ..((.((((....)))).))...((((((((((...))))).((((............(..((((((........))))))..)...(((((.....))))).)))).)))))....... ( -34.80) >consensus ___________________CAAGAGCGCGGCAUAGUAUGCCACACAAAUGCUGAAUAGUUGCGGAAGGUUAUGAAUUUCCGUGAGAAAUUACUACAAGUAAUAUGUGAGUGUUAUAUGGG .......................(((((((((.....)))).((((............(..((((((........))))))..)...(((((.....))))).)))).)))))....... (-24.90 = -25.23 + 0.33)
| Location | 9,364,883 – 9,364,984 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -19.25 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.964131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9364883 101 - 27905053 CCCAUACAACACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAGCAUUUGUGUGGCAUACUAUGCCGCGCUCUUG------------------- ..........(((.(((.......)))))).........(((((..........)))))................(((((((((...))))))))).....------------------- ( -18.40) >DroPse_CAF1 130201 120 - 1 CCCAUAUAACACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAACAUUUGUGUGGCAUACUAUGCCGCGCUCCUGCCACAGCGCCCUGCCACUG ........((((......(((((.....)))))......(((((..........)))))................))))(((((...)))))(((((........))))).......... ( -21.20) >DroEre_CAF1 134990 101 - 1 CCCAUACAACACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAGCAUUUGUGUGGCAUACUAUGCCGCGCUCUUG------------------- ..........(((.(((.......)))))).........(((((..........)))))................(((((((((...))))))))).....------------------- ( -18.40) >DroWil_CAF1 134944 100 - 1 CCCAUAUACCACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAACAUUUGUGUGGCAUACUAUGCCGCGCGUUC-------------------- ..........(((.(((.......)))))).........(((((..........)))))................(((((((((...)))))))))....-------------------- ( -18.90) >DroAna_CAF1 129491 101 - 1 CCCAUAUAACACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAGCAUUUGUGUGGCAUACUCUGCCGCGCUCUUG------------------- ..........(((.(((.......)))))).........(((((..........)))))................((((((((.....)))))))).....------------------- ( -18.20) >DroPer_CAF1 135904 120 - 1 CCCAUAUAACACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAACAUUUGUGUGGCAUACUAUGCCGCGCUCCUGCCACAGCUCCCUGCCACUG ........................(((.(((........(((((..........)))))................(((((((((...)))))))))...))).)))((.....))..... ( -20.40) >consensus CCCAUAUAACACUCACAUAUUACUUGUAGUAAUUUCUCACGGAAAUUCAUAACCUUCCGCAACUAUUCAACAUUUGUGUGGCAUACUAUGCCGCGCUCUUG___________________ ..........(((.(((.......)))))).........(((((..........)))))................((((((((.....))))))))........................ (-18.28 = -18.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:39 2006