| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,361,764 – 9,361,876 |
| Length | 112 |
| Max. P | 0.950676 |
| Location | 9,361,764 – 9,361,876 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.48 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -15.09 |
| Energy contribution | -15.37 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9361764 112 + 27905053 CCCUACAUUUUUG-GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA-ACAGGAACACACACACACACAUG------CAUAACCUUAGUUGCCCACAC .(((..(((((((-.(((((....))))).)).))))).................((((....))))..-..))).................(------((..........)))...... ( -19.80) >DroPse_CAF1 126633 101 + 1 UCGUACAUUUUUGGGCGGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAGCUCCACAA-AAAAGGAAACC----CACACACGCCCACAUAUGACU-------------- ..((.(((...((((((.((((...))))((((..........))))........((((...(((....-....)))...)----)))...))))))...))))).-------------- ( -29.60) >DroSec_CAF1 131174 107 + 1 CCCAACAUUUUUG-UCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACA--ACAAGAACACA----CACACAUG------CAUAACCUUAGAUGCCCACAC .......((((((-((((((....)))))((((..........))))........((((....)))).--)))))))....----.......(------(((........))))...... ( -21.60) >DroSim_CAF1 140210 108 + 1 CCCUACAUUUUUG-GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA-ACAAGAACACA----CACACAUG------CAUAACCUUAGAUGCCCACAC .......((((((-.(((((....)))))((((..........))))........((((....))))..-.))))))....----.......(------(((........))))...... ( -21.40) >DroYak_CAF1 132033 104 + 1 CCCAACAUUUUUG-GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA-ACAGGAACCCA----CACA----------CACAAACUUAGAUGCCCACAC .....(((((..(-.(((((....)))))((((..........))))........((((...((.....-...))...)))----)...----------......)..)))))....... ( -20.50) >DroAna_CAF1 126522 87 + 1 UCCUACAAUUUUG-GCGGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAAAACAGGAACACA----C----------------------------CCAUAC ((((...((((((-.((.((((...)))).)))))))).................((((....)))).....)))).....----.----------------------------...... ( -19.80) >consensus CCCUACAUUUUUG_GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA_ACAAGAACACA____CACACAUG______CAUAACCUUAGAUGCCCACAC .......((((((..(((((....)))))((((..........))))........((((....))))....))))))........................................... (-15.09 = -15.37 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:35 2006