| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,360,366 – 9,360,457 |
| Length | 91 |
| Max. P | 0.687086 |
| Location | 9,360,366 – 9,360,457 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.27 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -10.44 |
| Energy contribution | -10.63 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9360366 91 + 27905053 AAACACACAAAACUGCGGACAAGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGC---------------CAACACGCACACACACACAC---------- ..............((((((((((.((...((((((.((((...))))...))))))..))))))))))))---------------....................---------- ( -12.80) >DroPse_CAF1 125113 112 + 1 AAACACACGAAACUGCGGACAAGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGAGCAGCACCCCCCCCUCAACAGCAACCCA----CCCUCACACACAC .............((((((((((((((((....)))).(((((......))))).)))))))))((((.(((..(......)..)))))))))).....----............. ( -13.50) >DroEre_CAF1 130364 86 + 1 AAACACACAAAACUGCGGACAAGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGC---------------CAAUACGCACACA----CA----------- ..............((((((((((.((...((((((.((((...))))...))))))..))))))))))))---------------.............----..----------- ( -12.80) >DroYak_CAF1 130617 97 + 1 AAACACACAAAACUGCGGACAAGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGC---------------CAACACGCACACA----CACUCACACUCGC ..............(((((((((((((((....)))).(((((......))))).)))))))).(((.(((---------------......))).)))----..........))) ( -13.50) >DroAna_CAF1 124989 93 + 1 AAACACACAAAACUGCGGACAGGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGC---------------CAGCACAUAAACA----CACUCGCA----A .............((((((((((((((((....)))).(((((......))))).)))))))).((((((.---------------.......))))))----....))))----. ( -13.60) >DroPer_CAF1 130708 108 + 1 AAACACACGAAACUGCGGACAAGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGAGCAGCACCCCC----CAACAGCAACCCA----CCCUCACACACAU ............((((.(((((((.((...((((((.((((...))))...))))))..)))))))))...)))).......----.............----............. ( -12.90) >consensus AAACACACAAAACUGCGGACAAGAACAUUUAAUAAUGAAAUUGAAUUUACAAUUAUUUUUGUUUUGUUUGC_______________CAACACGCACACA____CACUCACA_____ ..............((((((((((.((...((((((.((((...))))...))))))..))))))))))))............................................. (-10.44 = -10.63 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:32 2006