| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,340,099 – 1,340,202 |
| Length | 103 |
| Max. P | 0.629385 |
| Location | 1,340,099 – 1,340,202 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -19.67 |
| Energy contribution | -20.18 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1340099 103 - 27905053 UACUACCACCAGGCGGAUGUCUGGCUGGAGAUGCUCAGCCACUUUGCCUACACGAAGGUACGUUCCAGGGUCACCCAUCCAUAGAUGCUC------------UGGCUUCUGCCCC ...........((((((....(((((((......)))))))...(((((......)))))....((((((.....((((....)))))))------------)))..)))))).. ( -31.40) >DroSec_CAF1 4185 115 - 1 UACUACCACCAGGCGGAUGUCUGGCUGGAGAUGCUCAGCCACUUUGCCUACACGAAGGUAUGUUCCAGGGUCACCCAUCCAUAGAUGCUCAGUCUGUGGCUGUGGCAUCUGCCCC .....(((((((((....)))))).)))((((((((((((((..(((((......))))).......(((...)))......((((.....))))))))))).)))))))..... ( -43.90) >DroSim_CAF1 4199 115 - 1 UACUACCACCAGGCGGAUGUCUGGCUGGAGAUGCUCAGCCACUUUGCCUACACGAAGGUAUGUUCCAGGGUCACCCAUCCAUAGAUGCUCAGUCUGUGGCUGUGGCACCUGCCCC ...........((((((....(((((((......)))))))...(((((......)))))...)))((((((((....((((((((.....))))))))..))))).)))))).. ( -41.80) >DroEre_CAF1 4331 92 - 1 UAUUACCACCAGGCGGACGUCUGGCUGGAGAUGCUCAGCCACUUUGCCUACACGAAGGUACGUUCCAGGGUCAGCCAUC-----------------------UGGCAUCUGCCGC .....(((((((((....)))))).)))((((((.(((......(((((......)))))........((....))..)-----------------------))))))))..... ( -30.40) >DroYak_CAF1 4463 92 - 1 UACUACCACCAAGCGGAUGUCUGGCUGGAGAUGCUCAGCCACUUUGCGUACACGAAGGUAGGUUCCAGGGUCUCCGAGU-----------------------UGGCAUCUGCCAC ............(((((((.(..(((((((((.((.(((((((((.((....))))))).))))..)).)))))).)))-----------------------..))))))))... ( -38.00) >DroAna_CAF1 3953 79 - 1 UAUUACCACCAGGCCGACGUCUGGCUGGAGAUGCUGAGCCACUUCAGUUACACGAAGGUAGGCCACAC-UUCCCCCAUCC----------------------------------- ........((((((....))))))..((((.((.((.(((.((((........))))...))))))).-)))).......----------------------------------- ( -21.60) >consensus UACUACCACCAGGCGGAUGUCUGGCUGGAGAUGCUCAGCCACUUUGCCUACACGAAGGUACGUUCCAGGGUCACCCAUCC______________________UGGCAUCUGCCCC .....(((((((((....)))))).))).(((.((..((..(((((......)))))....))...)).)))...............................(((....))).. (-19.67 = -20.18 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:55 2006