Locus 3458

Sequence ID 3R_DroMel_CAF1
Location 9,357,972 – 9,358,065
Length 93
Max. P 0.956191
window5549

overview

Window 9

Location 9,357,972 – 9,358,065
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.12
Mean single sequence MFE -22.57
Consensus MFE -15.79
Energy contribution -15.65
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -2.11
Structure conservation index 0.70
SVM decision value 1.46
SVM RNA-class probability 0.956191
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9357972 93 + 27905053
------------------------GAUC--CCAAUUCCUCUGCUAGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA
------------------------....--.....(((...((.((((.((((((((.....)))))))).))))..)).-..))).........(((((.(((......))).))))). ( -21.40)
>DroPse_CAF1 122619 116 + 1
GGCGCCAGCAUUCGGCAUUCGGCAGA-C--CCCAUCUCUGGCCUUGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA
((((((.......)))...(((.(((-.--....)))))))))..(((.((((((((.....)))))))).)))......-..............(((((.(((......))).))))). ( -27.20)
>DroWil_CAF1 125693 83 + 1
-------------------------------UAAC------CCCAGCCUAAACGUAAGCUCAUUACGUUUUGGCUUUGUUUUUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA
-------------------------------....------...((((.((((((((.....)))))))).))))....................(((((.(((......))).))))). ( -16.20)
>DroYak_CAF1 128151 93 + 1
------------------------GAUC--CCAAUUCCUCUGCUAGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA
------------------------....--.....(((...((.((((.((((((((.....)))))))).))))..)).-..))).........(((((.(((......))).))))). ( -21.40)
>DroAna_CAF1 122531 90 + 1
------------------------GAACCUCCAACC-----CCUUGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGAUUAUUUUCACUUAAAA
------------------------.....(((((..-----(...(((.((((((((.....)))))))).)))...)..-))))).........(((((.(((......))).))))). ( -22.00)
>DroPer_CAF1 128160 116 + 1
GGCGCCAGCAUUCGGCAUUCGGCAGA-C--CCCAUCUCUGGCCUUGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA
((((((.......)))...(((.(((-.--....)))))))))..(((.((((((((.....)))))))).)))......-..............(((((.(((......))).))))). ( -27.20)
>consensus
________________________GA_C__CCAAUC_CU__CCUAGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU_UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA
.............................................(((.((((((((.....)))))))).))).....................(((((.(((......))).))))). (-15.79 = -15.65 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:30 2006