| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,355,627 – 9,355,728 |
| Length | 101 |
| Max. P | 0.524154 |
| Location | 9,355,627 – 9,355,728 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 90.54 |
| Mean single sequence MFE | -24.34 |
| Consensus MFE | -18.34 |
| Energy contribution | -19.34 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9355627 101 + 27905053 CA----------GUACAGUUCCGCCGGAUUCAAAUCCCCCGGAUUCAGAUCAGCCC-UCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------.....(((..((((((....(((((...))))).(((.(((...-...)))))).........)))....((((((....)))))).....))).))).. ( -22.20) >DroSec_CAF1 125312 102 + 1 CA----------GUAUGGUUCCGACGGACUCAAAUCCCCCGGAUUCAGAUCAGCCUGUCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------((.(((((..((((((....(((((...)))))(((......)))..)))))).................((((((....)))))).....))))))).. ( -23.80) >DroSim_CAF1 134172 102 + 1 CA----------GUAUGGUUCCGACGGACUCAAAUCCCCCGGAUUCACAUCAGCCUGUCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------((.(((((..((((((..(((((((...)))))..........))..)))))).................((((((....)))))).....))))))).. ( -22.80) >DroEre_CAF1 125596 101 + 1 CA----------GUAUGGUUCCGCCGGAUUCAAAUCCCCCGGAUUCAGAUGAGCCC-UCUCAGUCCAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------((.((((((((..((((....))))..))))....((((..(..-.....)..)))).............((((((....))))))......)))))).. ( -25.80) >DroYak_CAF1 125776 111 + 1 CAGUAUGUUUCAGUAUGGUUCCGCCGGAUUCAAAUCCCCGGGACUCAGAUGAGCCC-UCUCAGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA .....(((((((...((((((((..((((....)))).)))))).))..)))(((.-.....((.....))...........((((((....)))))).....))).)))). ( -27.10) >consensus CA__________GUAUGGUUCCGCCGGAUUCAAAUCCCCCGGAUUCAGAUCAGCCC_UCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ...............(((.((((..((((....))))..)))).))).....(((.......((.....))...........((((((....)))))).....)))...... (-18.34 = -19.34 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:28 2006