| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,354,144 – 9,354,235 |
| Length | 91 |
| Max. P | 0.907242 |
| Location | 9,354,144 – 9,354,235 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.74 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -23.65 |
| Energy contribution | -24.15 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9354144 91 - 27905053 AACUGGAUAAGUUGGCAUUAGAGGGGCUUUGGCCUGAAUUGCAAUCGCCUUUUGGCCGCUAACGGAAAUAUUUAUUCCACCUUAUCCCAUA-------- ....((((((((((((.......((((....))))...........(((....))).))))))((((.......))))...))))))....-------- ( -27.30) >DroSec_CAF1 123829 98 - 1 AACUGCAUAAGUUGGCAUUAGUGGGGCU-UGGCCUGAAUUUCAAUCGCCUUUUGGCCUCUAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ((((.....))))(..(((.((((((..-.((..............(((....))).......((((.......)))).))...)))))).)))..).. ( -19.70) >DroEre_CAF1 124130 99 - 1 AACUGGAUAAGUUGGCAUUAUAGGAGCUUUGGCCUGAAUUGCAAUCGCCUUUGGGCCGCCAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ....((((((((((((.((....)).....((((..((..((....)).))..))))))))))((((.......))))...))))))............ ( -29.10) >DroYak_CAF1 124298 99 - 1 AACUGGAUAAGUUGGCAUUAGAGGGGCUUUGGCCUGAAUCGCAAUCGCCUUUUGGCCGCCAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ....((((((((((((....((.((((....))))...))......(((....))).))))))((((.......))))...))))))............ ( -30.30) >consensus AACUGGAUAAGUUGGCAUUAGAGGGGCUUUGGCCUGAAUUGCAAUCGCCUUUUGGCCGCCAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ....((((((((((((.......((((....))))...........(((....))).))))))((((.......))))...))))))............ (-23.65 = -24.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:27 2006